PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540625.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 358aa    MW: 39682.1 Da    PI: 4.8421
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540625.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF374.3e-121348338
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                       ie+++ r+ t+skRr g++K A+ LS L+da va+ 
  KN540625.1_FGP005 13 IEEDRDRSLTLSKRRDGLFKLANDLSLLTDASVAIC 48
                       99*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-6261IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-5525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-13972IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.4561047IPR002100Transcription factor, MADS-box
PfamPF003198.0E-121353IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-52540IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-54061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVRRGRRKGV RYIEEDRDRS LTLSKRRDGL FKLANDLSLL TDASVAICLH DNNKAQFFGA  60
PSVKPIVDAF VSEAEPFADE QLKAKLTSMQ SELVQLENEE EEKDKKTKES IQRFKEAQEE  120
SLGMGMAKHL FSRLEDLSHD DMRELLDVLL PLQQDFKKRL PPLRHGSKLQ IGGSSAWAHQ  180
QPSCSRFLAS HRPFTPLLPG GASGVPMIPP PPVPGSPWSH IFPLRPPLFP SPELVPSQQL  240
PPVSPPQNTV APPPMHAPLV QQPLTNQSLA VPLLTQWQMR FGDQPPAEVQ ACTPVEQPQN  300
DNAVHTPTFS DSFLSELLAD VSDDGIATAE PLCSPPIDDQ FLADVDWFAD LDPIDGNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540625.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037420.0AP003742.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1118_D07.
GenBankAP0043380.0AP004338.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0507H12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882749.10.0uncharacterized protein LOC107277131
TrEMBLI1Q7V20.0I1Q7V2_ORYGL; Uncharacterized protein
STRINGORGLA07G0019400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-09AGAMOUS-like 61