PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540615.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 388aa MW: 44195.4 Da PI: 8.2839

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540615.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.2	4.7e-16	31	111	9	95
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ++ +++pk+f+++ +g+ + +++le+++ +s +v + +k+++++++t+GW +Fvk +L+ gD+++F+++g+s+f v KN540615.1_FGP001 31 MGDFQHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVIV--DKSQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 111 5556788******999888..5558***********..*******************************99999..554 PP
2	B3	49.3	9e-16	301	384	10	99
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ + l++ k++++++ ++ +kt++ ++ g +W+++l + +sg + +GW++F+++n++ +gD+++F+l ++++ +++v+++r+ KN540615.1_FGP001 301 SGRISSLSIAKRYVDNYLQD---EKTIR-LSRLGDKWNIRL--SDSSGNRRMVGGWRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRA 384 5566789*****888433...34788.56799***..77777777889*****************9998888**9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.84E-20	20	114	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-18	20	114	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.448	23	116	IPR003340	B3 DNA binding domain
CDD	cd10017	8.31E-17	24	114	No hit	No description
SMART	SM01019	4.5E-7	26	116	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.6E-14	34	109	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.1E-19	285	385	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.1E-17	286	385	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.58E-17	289	383	No hit	No description
SMART	SM01019	1.5E-6	291	385	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.266	292	385	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.6E-14	299	384	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET 60 RNRNSHTVIV DKSQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK 120 ACSAVVDDSQ NPNVQERRVD ATETLNSLRA HSQPMPMQSP TETVNHSHTR PCPMHTAVDC 180 MPLSHAHPQP MSMQFPTETV NHCHAPTGPM EMPLENVAIS HAHARPLQMQ SQPTDRLTQV 240 QRGYYLSSKD QDCRVGVIPD PIIGQKTILS RVQVNVVKRK IQNIGSQIPI FVSVIGKNNA 300 SGRISSLSIA KRYVDNYLQD EKTIRLSRLG DKWNIRLSDS SGNRRMVGGW RKFAEDNDVG 360 VGDICLFELL KNHKCTMKVH IIRAKDIC

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET  60
RNRNSHTVIV DKSQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK  120
ACSAVVDDSQ NPNVQERRVD ATETLNSLRA HSQPMPMQSP TETVNHSHTR PCPMHTAVDC  180
MPLSHAHPQP MSMQFPTETV NHCHAPTGPM EMPLENVAIS HAHARPLQMQ SQPTDRLTQV  240
QRGYYLSSKD QDCRVGVIPD PIIGQKTILS RVQVNVVKRK IQNIGSQIPI FVSVIGKNNA  300
SGRISSLSIA KRYVDNYLQD EKTIRLSRLG DKWNIRLSDS SGNRRMVGGW RKFAEDNDVG  360
VGDICLFELL KNHKCTMKVH IIRAKDIC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540615.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068359	0.0	AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648704.1	0.0	B3 domain-containing protein Os08g0324300
Refseq	XP_015648705.1	0.0	B3 domain-containing protein Os08g0324300
Refseq	XP_015648706.1	0.0	B3 domain-containing protein Os08g0324300
Refseq	XP_015648707.1	0.0	B3 domain-containing protein Os08g0324300
Swissprot	Q6Z0D9	1e-178	Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBL	A0A0E0I7Z2	0.0	A0A0E0I7Z2_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QHC2	0.0	A0A0E0QHC2_ORYRU; Uncharacterized protein
TrEMBL	A3BRX2	0.0	A3BRX2_ORYSJ; Uncharacterized protein
STRING	ORUFI08G11760.4	0.0	(Oryza rufipogon)
STRING	ONIVA08G05080.2	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12482	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	5e-16	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]