PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540608.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 101aa MW: 11546.2 Da PI: 9.3587 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.1 | 1.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++ KN540608.1_FGP004 9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 59 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.941 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.17E-38 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-30 | 2 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLYEYATD 60 SWYVLTLGES FPLNSFDFLS SEGTYKGYNI TSEFCGHPYI Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-20 | 1 | 65 | 1 | 66 | MEF2 CHIMERA |
6byy_B | 2e-20 | 1 | 65 | 1 | 66 | MEF2 CHIMERA |
6byy_C | 2e-20 | 1 | 65 | 1 | 66 | MEF2 CHIMERA |
6byy_D | 2e-20 | 1 | 65 | 1 | 66 | MEF2 CHIMERA |
6bz1_A | 2e-20 | 1 | 65 | 1 | 66 | MEF2 CHIMERA |
6bz1_B | 2e-20 | 1 | 65 | 1 | 66 | MEF2 CHIMERA |
6bz1_C | 2e-20 | 1 | 65 | 1 | 66 | MEF2 CHIMERA |
6bz1_D | 2e-20 | 1 | 65 | 1 | 66 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540608.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092556 | 1e-103 | AC092556.8 Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete sequence. | |||
GenBank | AC135225 | 1e-103 | AC135225.4 Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete sequence. | |||
GenBank | AF377947 | 1e-103 | AF377947.3 Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0032E21, complete sequence. | |||
GenBank | AP014959 | 1e-103 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-103 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650602.1 | 5e-35 | PREDICTED: MADS-box transcription factor 14 | ||||
Refseq | XP_015631033.1 | 6e-35 | MADS-box transcription factor 14 isoform X1 | ||||
Refseq | XP_015631034.1 | 5e-35 | MADS-box transcription factor 14 isoform X2 | ||||
Swissprot | Q10CQ1 | 4e-36 | MAD14_ORYSJ; MADS-box transcription factor 14 | ||||
TrEMBL | A0A3L6EH16 | 1e-36 | A0A3L6EH16_MAIZE; MADS-box transcription factor 14 | ||||
STRING | XP_004172815.1 | 1e-36 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 4e-35 | AGAMOUS-like 8 |