PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN540599.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 398aa MW: 43115.6 Da PI: 7.6924 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 40.6 | 4.4e-13 | 80 | 104 | 1 | 25 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegk 25 d+epgrCrRtDGKkWRCs+++ +++ KN540599.1_FGP001 80 DPEPGRCRRTDGKKWRCSKEAAPDS 104 79*******************9986 PP | |||||||
2 | QLQ | 60.9 | 3.6e-21 | 19 | 54 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvPp+L+++i++ KN540599.1_FGP001 19 PFTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRR 54 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.7E-11 | 18 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.879 | 19 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.8E-15 | 19 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 12.565 | 80 | 130 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-9 | 81 | 104 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence Send to blast |
MAAGVRDGVP GAAARRLPPF TAAQYEELEQ QALIYKYLVA GVPVPPDLVL PIRRGLDSLA 60 ARFYNHPALG YGPYFGKKLD PEPGRCRRTD GKKWRCSKEA APDSNNGGGG GGGRNMPSSF 120 GSALGSQLHM DNAAPYAAVG GGTGKDLRFP ECCLFALPIL SGISFQPQKP GTVSVRDFCS 180 GAVNYLALAK YFVSEDVSPI TTIPETFSSG QLKPWFYVCL YEFMTRILTF GKGTCLALAF 240 VFPTNSQSLY LLKFRYTAYG TRSLADEQSQ LITEAINTSI ENPWRLLPSQ NSPFPLSSYS 300 QLGALSDLGQ NTPSSLSKVQ RQPLSFFGND YAAVDSVKQE NQTLRPFFDE WPKGRDSWSD 360 LADENANLSS FSGTQLSISI PMASSDFSAA SSRSTNGD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences (PubMed:24532604). Transcription activator that plays a regulatory role in grain development (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates the expression of genes promoting cell proliferation (PubMed:26187814, PubMed:26936408). Activates the expression of expansin genes to promote cell expansion and grain size (PubMed:27250747). May promote grain size by activating brassinosteroid responses (PubMed:27250747). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1 regulatory module that plays an important role in grain size determination (Probable) (PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269|PubMed:24532604, ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747, ECO:0000269|PubMed:27250749, ECO:0000305|PubMed:26187814, ECO:0000305|PubMed:27107174, ECO:0000305|PubMed:27250747, ECO:0000305|PubMed:27250749}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN540599.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: The microRNA396c negatively regulates GRF4 at the transcriptional level. {ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003994 | 0.0 | AP003994.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1111_E07. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165187.1 | 1e-106 | growth-regulating factor 4-like | ||||
Swissprot | Q6ZIK5 | 5e-85 | GRF4_ORYSJ; Growth-regulating factor 4 | ||||
TrEMBL | A0A3B6NQZ4 | 1e-107 | A0A3B6NQZ4_WHEAT; Uncharacterized protein | ||||
STRING | OGLUM02G29770.1 | 2e-83 | (Oryza glumipatula) | ||||
STRING | ORUFI02G30740.1 | 2e-83 | (Oryza rufipogon) | ||||
STRING | ONIVA02G31920.1 | 2e-83 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-37 | growth-regulating factor 5 |