PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540590.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 420aa    MW: 46204.6 Da    PI: 4.498
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540590.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.25.1e-2795160171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+kf++ll+++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  KN540590.1_FGP003  95 RYDSSLGLLTKKFINLLKQAPDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 160
                        6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-2993162IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.18E-1895158IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-3595160IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-2497160IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146603.02E-49170276No hitNo description
SuperFamilySSF1440741.05E-34173276No hitNo description
PfamPF164211.9E-33175274IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEYIETVPLN HDYKIQAILS SQQKRKAPEE SDVAESSDCM ITSPGFTVSP MLTPVSGKAV  60
KTSKSKTKNN KAGPQTPTSN VGSPLNPPTP VGTCRYDSSL GLLTKKFINL LKQAPDGILD  120
LNNAAETLEV QKRRIYDITN VLEGIGLIEK TLKNRIRWKG LDDSGVELDN GLSALQAEVE  180
NLSLKEQALD ERISDMREKL RGLTEDENNQ RWLYVTEDDI KGLPCFQNET LIAIKAPHGT  240
TLEVPDPDEA GDYLQRRYRI VLRSTMGPID VYLVSQFDEK FEDLGGGATP SGHANVPKHQ  300
PTEVFNTTNA GVGQCSNSVA VDNNIQHSQT IPQDPSASHD FGGMTRIIPS DIDTDADYWL  360
ISEGDVSITD MWKTAPDVQW DEGLDTDVFL SEDVRTPSSH NQQPSAVGGP QMQVSDMHKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-2487161274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540590.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0417250.0AB041725.1 Oryza sativa OsE2F1 mRNA for E2F homolog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623378.10.0transcription factor E2FB
SwissprotQ9FNY01e-126E2FA_ARATH; Transcription factor E2FA
TrEMBLQ6ETV70.0Q6ETV7_ORYSJ; E2F homolog
TrEMBLQ9FRZ90.0Q9FRZ9_ORYSA; E2F homolog
STRINGORGLA02G0166600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-123E2F transcription factor 3
Publications ? help Back to Top
  1. Magyar Z, et al.
    Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes.
    EMBO J., 2012. 31(6): p. 1480-93
    [PMID:22307083]