PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540582.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 237aa MW: 26931.6 Da PI: 4.5798 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.4e-14 | 31 | 79 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 rg+WT +Ed+ l++++ +G g+W++ ar gRt++++k++w++ KN540582.1_FGP002 31 RGPWTVDEDLTLINYISDHGEGRWNALARAAAqhlPGRTDNEIKNYWRT 79 89*************************987777777***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.777 | 26 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 26 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-13 | 27 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-12 | 30 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 31 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.29E-12 | 33 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEMVLQRTSH HPVPGEQQEA AAELSSAELR RGPWTVDEDL TLINYISDHG EGRWNALARA 60 AAQHLPGRTD NEIKNYWRTR VQKHAKQLNC DVNSKRFKDA MKYLWMPRIA ERIHARAGAV 120 DDSGDYSNND LSCVSGVTMA TVANCFDGSP SMVTSSSSDS FTSESQDLEK INLHVHGDDE 180 KMNAGDWMQE VDHEFWSTEI QPNNEQFQDQ QLNGWVQGFS EGLSETLWSL EDIWKMQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540582.1_FGP002 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135190 | 0.0 | AC135190.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY026332 | 0.0 | AY026332.1 Oryza sativa Myb transcription factor JAMyb mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618000.1 | 1e-152 | transcription factor JAMYB | ||||
Swissprot | Q2QZJ8 | 1e-153 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A0E0RC24 | 1e-151 | A0A0E0RC24_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G24630.1 | 1e-151 | (Oryza rufipogon) | ||||
STRING | OS11T0684000-01 | 1e-151 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-41 | myb domain protein 78 |
Publications ? help Back to Top | |||
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