PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540554.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 116aa MW: 13073.8 Da PI: 8.5006 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.2 | 3.5e-07 | 70 | 88 | 2 | 21 |
AP2 2 gykGVrwdkkrgrWvAeIrd 21 y+G+r+++ +g+W+AeIr KN540554.1_FGP002 70 LYRGIRRRP-WGKWAAEIRF 88 69*******.********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.559 | 70 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-7 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MCGGAIISDF VPQREAHRAA TGSKRALCAS DFWPSASQEA ADFDHLTAPC TFTPDQAAEE 60 PTKKRERKTL YRGIRRRPWG KWAAEIRFHV IGVIYRIELS SDRLLSSSCK DECSKE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 77 | KRERKTLYRGIRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540554.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY297447 | 1e-141 | AY297447.1 Oryza sativa (japonica cultivar-group) AP2 domain transcription factor EREBP mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644689.1 | 2e-57 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0E0EG43 | 4e-56 | A0A0E0EG43_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G23220.1 | 7e-57 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-17 | ethylene-responsive element binding protein |