PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540543.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 27322.9 Da PI: 9.1737 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.9e-09 | 28 | 73 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +W++eE +++ +a + l + +W+++a+ ++ gR++ ++ ++++++ KN540543.1_FGP003 28 KWSPEENKQFERALAGLDLRcpDWDRVASAIP-GRSALEVMNHFRDL 73 8*****************99************.***********976 PP | |||||||
2 | Myb_DNA-binding | 28.5 | 3.6e-09 | 102 | 139 | 10 | 47 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 el++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky KN540543.1_FGP003 102 ELFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 139 79999********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.1E-4 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 27 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.44E-8 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.41E-7 | 28 | 73 | No hit | No description |
Pfam | PF00249 | 3.1E-8 | 28 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.168 | 28 | 74 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0038 | 92 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-6 | 102 | 140 | No hit | No description |
SuperFamily | SSF46689 | 1.72E-10 | 102 | 144 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-6 | 102 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-6 | 102 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.762 | 102 | 140 | IPR017877 | Myb-like domain |
TIGRFAMs | TIGR01557 | 2.6E-10 | 103 | 142 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MMMRDVCMEV LPPMDHYASR GNWFMARKWS PEENKQFERA LAGLDLRCPD WDRVASAIPG 60 RSALEVMNHF RDLELDVQQI ENGMVPFPVY GAAAAVRAST LELFLLGLKK YGKGDWRNIS 120 RNFVQTRTPT QVASHAQKYF IRLNSGGKDK RRSSIHDITT VNLTDDRPPS PSQSSLISNQ 180 SNTSTLTAAV APFSSTADVK PQNAANASFS SPSRTLGMAG YGMGLQDQGL QCGGPLHDQL 240 AASRSILF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540543.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067964 | 0.0 | AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence. | |||
GenBank | EU837250 | 0.0 | EU837250.1 Oryza sativa Japonica Group clone KCB707G04 myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621817.1 | 1e-168 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-55 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0E0FQU5 | 1e-166 | A0A0E0FQU5_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8AD74 | 1e-166 | B8AD74_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q0JQS2 | 1e-166 | Q0JQS2_ORYSJ; Myb transcription factor | ||||
STRING | OS01T0142500-01 | 1e-167 | (Oryza sativa) | ||||
STRING | ONIVA01G29400.1 | 1e-167 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-42 | MYB family protein |
Publications ? help Back to Top | |||
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