PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540535.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 384aa    MW: 42310.2 Da    PI: 9.9308
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540535.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.79.9e-23252295345
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSST CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedp 45 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver +e++
  KN540535.1_FGP002 252 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERLRENG 295
                        9*************************988**********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-18203248IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-23238294IPR003657WRKY domain
PROSITE profilePS5081123.02245294IPR003657WRKY domain
SuperFamilySSF1182904.71E-19248296IPR003657WRKY domain
SMARTSM007742.8E-21250310IPR003657WRKY domain
PfamPF031061.6E-18252294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAARTLDTQF RPYSRGRAVK THLHIEDSIS LTLVLDTVDP HGERSEELRE SEASLAGLAP  60
AAAAAAAMEE EVEAANRAAV ESCHRVLALL SQQQDPALLR SIASETGEAC AKFRKFQFGA  120
TAHRYPFQQH QHQQKLQAEM FKRSNSGISL KFDSPSATGT MSSAFMSSLS MDGSVASLEG  180
KPPFHLIGGP VASDPVNAHH APKRRCTGRG EDGSGKCATT GRCHCSKRRK LRIKRSIKVP  240
AISNKIADIP PDEYSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER LRENGGRTCD  300
WIVTGKICSK KGGIRFEDFK GRLTKGSEQL KHRVSLEKDK QDLAFSVHKF TCNDLPLYVA  360
FALLKDQNFL LAEESFSIKA VSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-13243290753WRKY transcription factor 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540535.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706480.0AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
GenBankAK1048900.0AK104890.1 Oryza sativa Japonica Group cDNA clone:001-045-D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664169.11e-122PREDICTED: protein WRKY1
STRINGOB12G24610.11e-120(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-56WRKY DNA-binding protein 21