PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540497.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 441aa MW: 47635.1 Da PI: 5.9218 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 108 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEde l + v+ +G + W+ Ia+ ++ gR +kqc++rw ++l KN540497.1_FGP002 108 KGGWTREEDEVLRQMVRHHGDRKWAEIAKSLP-GRIGKQCRERWTNHL 154 688*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.2e-17 | 162 | 202 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd l++a++ +G+ W++Ia++++ gR+++ +k++w+ KN540497.1_FGP002 162 IWTEEEDRMLIEAHQTYGNS-WSAIAKRLP-GRSENTIKNHWN 202 6*****************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.893 | 103 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.41E-31 | 105 | 201 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 108 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 110 | 159 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.94E-16 | 111 | 154 | No hit | No description |
SMART | SM00717 | 4.8E-17 | 159 | 207 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.517 | 159 | 209 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 160 | 206 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.3E-16 | 163 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.69E-14 | 163 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MAAAGNSFLN QELVKAADGV SDWHLPSSSH GGTCHTNTRA APITVGVPDL GCPVSSIGVA 60 TSSSLTPKEG LATASYNSVV AFPVGATMVP QQQQTQAAGS NDNPGLVKGG WTREEDEVLR 120 QMVRHHGDRK WAEIAKSLPG RIGKQCRERW TNHLHPDIKK DIWTEEEDRM LIEAHQTYGN 180 SWSAIAKRLP GRSENTIKNH WNATKRSLNS KRRLRKKNSE QTVPGQPSLL ENYIRSCQHM 240 LPSEIALPPP APPAPFDISR YGNSGVIGAS PTLPVVQEPG TSTPPGLVMF LDLLNQAIPH 300 PPQPETMDLF NMTPEVSHLN TSGYCLQLDA GGNLYYGQLP APAPVQPHGI SSQELQDTPH 360 LSLYYPLSSF AGSHTDGTVE FDHQLSNPDG GHYGEEAGPS SVAAGGSANG MDDNDVVQMA 420 SNQFMMPSED EGILDLARWI N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-42 | 104 | 210 | 3 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540497.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645903.1 | 0.0 | transcription factor MYB119 | ||||
TrEMBL | Q8GVH9 | 0.0 | Q8GVH9_ORYSJ; Myb-like protein | ||||
STRING | ORGLA07G0062800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-47 | myb domain protein 98 |