PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540490.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 552aa    MW: 60599.1 Da    PI: 7.6415
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540490.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-09193240347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        +W + E+e l ++v+q+G+g+Wk I    +    gR + ++k++w++ 
  KN540490.1_FGP003 193 KWCALEEETLRKGVEQYGNGNWKDILTNNPdvfIGRKAMDLKDKWRNM 240
                        68888****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-12184244IPR009057Homeodomain-like
PROSITE profilePS5129413.178186245IPR017930Myb domain
SuperFamilySSF466891.25E-13188243IPR009057Homeodomain-like
SMARTSM007177.2E-6190243IPR001005SANT/Myb domain
CDDcd116607.77E-16192241No hitNo description
PfamPF002492.1E-7193240IPR001005SANT/Myb domain
PfamPF012662.4E-10310532IPR006076FAD dependent oxidoreductase
Gene3DG3DSA:3.30.9.108.4E-9360481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MAAERIVGDG AIETWRAADE VTRAKYRLLV QNTGEQRARE IEGKLGETIP QGNQISTPEV  60
HKMMDALKSS CANLHSVVED PLPAAKAAAD EVLAARMDKA VDLNAGEVSN QPTACDIAGP  120
SARADNLDAP RKGTAASLMD WNPTARTFQW EDSPDPDGSR SPIHRPQLPS PRRTTFSPLQ  180
PADSKAKRRK ARKWCALEEE TLRKGVEQYG NGNWKDILTN NPDVFIGRKA MDLKDKWRNM  240
MSENLYPAFA VCIIPTVVIN HQCLLVHFAT TRMLNLHSPK GSRVRVDIYD EASGVSGGLL  300
HPYSPKVYMP LALNINPKKY LQVALFFACQ NMSAEASLQS SEQKECKLFK EHIDDLQQLA  360
GDYDSVIICL GARASSLPEL TNKLPLRTCR GVIAEFQLPS DTVETYGSQS PSILSDAWLA  420
FQGPRTVSIG STWQWKSEKY SSSVSDDEAL NAMEELLPKA SAVYPGITKW KFVQARAGIR  480
AMPPLTANGS LPLLGCLNDV IGKRSNCNFW LVGGLGARGL LFHGLAGKLT AKAVISSDEN  540
LIPPEFTCWK EP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540490.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4290170.0AY429017.1 Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DXX70.0A0A0E0DXX7_9ORYZ; Uncharacterized protein
STRINGOMERI06G06010.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-11TRF-like 5