PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540458.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28093.8 Da    PI: 4.9491
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540458.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.58.3e-24959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krie+ ++rqvtfsk r+g lKKA+EL vLCda+v v++fs +gkl++++s
  KN540458.1_FGP003  9 KRIEDATRRQVTFSKCRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 59
                       79***********************************************96 PP
2K-box61.14.5e-2182173999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++++ e++  e+++L++ei++L+ ++R+  GedL+s s + eL qL+ qLe+sl+k+ ++K+el+ +q+e+++++ + ++e+n+ L +++ 
  KN540458.1_FGP003  82 ETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVStVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMMS 173
                        4556678999***************************984689*******************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.324161IPR002100Transcription factor, MADS-box
CDDcd002659.52E-36272No hitNo description
SuperFamilySSF554551.31E-26278IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-253859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-2184172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.04187178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKIEMKR IEDATRRQVT FSKCRAGFLK KANELAVLCD AQVGVVVFSD KGKLFDFCSP  60
PVILMELFHR YEITTRNTRL QETNRDDEQM VMEITRLRNE IDQLEASLRR QTGEDLSSVS  120
TVDELSQLQL QLESSLSKVH ARKDELMSQQ LEDMRRMHQT VHEQNNFLCR MMSENWHSEN  180
WQSPGSGEAS AMEALTMLPP AAAATTAAEA FNCFFPEEEK GVAASSTLLQ LWPQPHDGDQ  240
PDLRLW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540458.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740930.0AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882177.11e-119MADS-box transcription factor 30 isoform X7
SwissprotQ655V41e-121MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A0P0WZS90.0A0A0P0WZS9_ORYSJ; Os06g0667200 protein
STRINGOS06T0667200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-38MIKC_MADS family protein