PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540427.1_FGP004

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 734aa MW: 78885.4 Da PI: 6.9749

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540427.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.4	8.9e-16	461	500	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + KN540427.1_FGP004 461 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 500 689**********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.1E-15	460	501	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.685	461	553	IPR005172	CRC domain
Pfam	PF03638	7.8E-12	463	498	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MTLTTAGYGK SCICLGKQEA LIALDSPVFN FINSLSPIPP PKPSDSAHNV QLFKSSDLAP 60 VSSIFASPHV NPAKESKIPI REDSVQLSRE SHSPNSVRTR TGATSSIRMI RCKNIVSENC 120 SITCYLNDST SSKASQPVQL CGGSAESDTN QNTDGKKDPT TEQDRTDIEF VLLDQSGPEK 180 MDSSQSGNNV CENQLSEQHK DELGSFDGGY MFAHQPHSDM LRLAPPFESE TQLVNETLQT 240 DNVYCESLLT DGPSGSYTQN SAPDPHLYWA GAVEGCATDY TPQMLPGACQ SQLVPNDQIN 300 NKLNEPSDYM PMDHNVSSQN LRGMRRRCLF NEKSGAANKG AKNTSARHST NSTTPRRKIS 360 SSDNNLKTLR TPPCALPGIG LHLNALATVP KDKMVPHNDI QSSLNQASNV PSAVGSSPPT 420 DDPHTVNDDS SQTAVVAYVG ESSQGSPKKK RHKFDNGDGT SCKRCSCKKS KCLKLYCECF 480 HAGVFCSEPC SCQGCLNKPS NMETVLSTRE QIESRNPLAF APKVIRTEPG QELAGGVGCS 540 VSCRCEGCKN AFGRREGVAL LGIEEAKRGC EEKDGGVKEE TTDNDKQLVI YQDGINLTPA 600 ESVLATPSVV DYRPLVALPP LSSKKPRSST KLGGYSSRLE GHLKSDILLS PFESYAEMML 660 GDGTSNVLKG ESSPQTSVKV VSPNKKRVSP PRIGTGLSPI CKSGRKLILK SIPSFPSLGG 720 DITNEDPNTS SLAP

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MTLTTAGYGK SCICLGKQEA LIALDSPVFN FINSLSPIPP PKPSDSAHNV QLFKSSDLAP  60
VSSIFASPHV NPAKESKIPI REDSVQLSRE SHSPNSVRTR TGATSSIRMI RCKNIVSENC  120
SITCYLNDST SSKASQPVQL CGGSAESDTN QNTDGKKDPT TEQDRTDIEF VLLDQSGPEK  180
MDSSQSGNNV CENQLSEQHK DELGSFDGGY MFAHQPHSDM LRLAPPFESE TQLVNETLQT  240
DNVYCESLLT DGPSGSYTQN SAPDPHLYWA GAVEGCATDY TPQMLPGACQ SQLVPNDQIN  300
NKLNEPSDYM PMDHNVSSQN LRGMRRRCLF NEKSGAANKG AKNTSARHST NSTTPRRKIS  360
SSDNNLKTLR TPPCALPGIG LHLNALATVP KDKMVPHNDI QSSLNQASNV PSAVGSSPPT  420
DDPHTVNDDS SQTAVVAYVG ESSQGSPKKK RHKFDNGDGT SCKRCSCKKS KCLKLYCECF  480
HAGVFCSEPC SCQGCLNKPS NMETVLSTRE QIESRNPLAF APKVIRTEPG QELAGGVGCS  540
VSCRCEGCKN AFGRREGVAL LGIEEAKRGC EEKDGGVKEE TTDNDKQLVI YQDGINLTPA  600
ESVLATPSVV DYRPLVALPP LSSKKPRSST KLGGYSSRLE GHLKSDILLS PFESYAEMML  660
GDGTSNVLKG ESSPQTSVKV VSPNKKRVSP PRIGTGLSPI CKSGRKLILK SIPSFPSLGG  720
DITNEDPNTS SLAP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540427.1_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073942	0.0	AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620275.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0BUZ1	0.0	A0A0E0BUZ1_9ORYZ; Uncharacterized protein
STRING	OGLUM12G19880.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12746	26	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-47	Tesmin/TSO1-like CXC domain-containing protein