PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540427.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 344aa    MW: 38921.9 Da    PI: 5.9524
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540427.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.66.7e-15113148439
                TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  KN540427.1_FGP001 113 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 148
                        79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.110.101.6E-241199IPR016135Ubiquitin-conjugating enzyme/RWD-like
SuperFamilySSF544953.58E-261199IPR016135Ubiquitin-conjugating enzyme/RWD-like
PROSITE profilePS5012713.9751699IPR000608Ubiquitin-conjugating enzyme E2
SMARTSM002120.002316128No hitNo description
PfamPF001796.6E-104395IPR000608Ubiquitin-conjugating enzyme E2
SMARTSM011147.8E-13110151IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163414.281112150IPR005172CRC domain
PfamPF036383.8E-11113147IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MASSGDPSAV VVPRNFRLLE ELERGEKGIG DGSVSYGMDD ADDIYMRSWT GTIIGPHNTV  60
HEGRIYQLKL FCDKDYPDRP PTVKFHSRIN MTCVNPENGL EQLIRSPMDF GRRKCTCKKS  120
GCLKKYCDCY QGGAGCSINC KCDDCKNPYG RKVGVILDGK NILAGPTPNE RNGTEADSSD  180
DEEDDYYMNR PLSPVSPSPV SRESSFQQET LVGVEVQTMN GHLYPKPLTQ VRPESWQLTR  240
RPTEEVRGEA WHYLRRPSED GTSDVMEGHA DPKFQRDNKQ LENHVDRYSI PRCIEVMNAM  300
ADLSPIEKSL APDVFLDPSN REIFLSLTVD IRTMWLKRKM KSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6d6i_A9e-328100395Ubiquitin-conjugating enzyme E2 variant 1
6d6i_D9e-328100395Ubiquitin-conjugating enzyme E2 variant 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540427.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4067180.0CU406718.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618281.10.0protein lin-54
TrEMBLA0A0D9Y1840.0A0A0D9Y184_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Y1850.0A0A0D9Y185_9ORYZ; Uncharacterized protein
STRINGLPERR12G15270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.18e-18TESMIN/TSO1-like CXC 2