PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540374.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 272aa    MW: 29961.3 Da    PI: 7.6812
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540374.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59.4e-11130187562
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +  l ++
  KN540374.1_FGP002 130 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQ 187
                        899******************************************9999877766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-18126190IPR004827Basic-leucine zipper domain
PfamPF077161.4E-9127179IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829128191IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.52E-12130181No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-12130187No hitNo description
CDDcd147032.49E-19131182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEALNSSEER HEDRDSRASG TRAGSVADSS ENEAESHSTP VERKDGGGKS RHCRSLSVDS  60
FIEKLNFDES PKLPLPSPSG GLSRSGSGSL DGGAASLFGA EFANGEFTEA EKKKIMANER  120
LAEIALTDPK RVKRILANRQ SAARSKERKM RYIQELEHKV QVLQTEATTL SAQLTMLQRD  180
STGLATQNNE LKIRLQAMEQ QAQLRDALNE ALTAEVQRLK LATGEITDGR MSKGLQQQMN  240
SQLIQLQQLQ IQQQQSSQTT QQGQQQQPQK SA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540374.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4677320.0AF467732.1 Oryza sativa Vsf-1 protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651132.10.0transcription factor VIP1
SwissprotQ6S4P44e-54RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A0E0IFC10.0A0A0E0IFC1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QLY40.0A0A0E0QLY4_ORYRU; Uncharacterized protein
TrEMBLB9FYE00.0B9FYE0_ORYSJ; Uncharacterized protein
STRINGORUFI08G24860.10.0(Oryza rufipogon)
STRINGONIVA08G25390.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-76bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]