PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540336.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 834aa    MW: 89941.8 Da    PI: 6.3185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540336.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00046977341355
                        HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  KN540336.1_FGP006 697 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTIKHMLFLQ 734
                        77899************6.....5999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-2418183IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.20E-4678735No hitNo description
PROSITE profilePS5088810.499684733IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-4697738IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MAGSLILAGA EFELHFRFWL LCGRKLVWGD GHYERAAGAP SISGFEAMDL LLKEKAAALR  60
SGTGRGGSGG GGGEGHAADG AAVHGQDRVD ALVHKAMAQQ VHVMGEGVIG QAALTGLHRW  120
IVHDIVDECE EEDEVLLEMK DQFCAGIQTI AVIPVLPRGV IQLGSTKMVM EEAAFIDHVR  180
SLFQQLGSST AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHL EDLAGGGNTY NDDMINHQFR  240
HQKAPASTIQ SFNPVQQFYA GPTFSRPVTI ASRCDLFQPD HGSTFTFNSQ SEDNRSIALP  300
KNNVSHSKTS NDAFSHAFNP FNEPNVSISG RRECVSIEQH GSCCNGEMEI TKGRTASSSC  360
TGKTDILNKV DALLSQDCLV DCQTSNATSV NRKFQTMSIV DNTKLQDGSY SIPNAALVDS  420
TRYSDCFQSL LGTIQGSSSS NSNTIHVGTY HNAVPGESNF CPLGDRNAAN SSDLPELLAS  480
PIPLGLTGGN DLFDVLQLQQ KPSGSNNSEA NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT  540
EADPDQLLDA IVSKIITGHK QNVDTSASCS TTVASFDRQL HSDSHLYTTG PSSGPIFCNF  600
ASVSPAAIKT EGPAAGSRQS SSSIDKSTGY SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ  660
ASDNISAGQC KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI VPNSAKCSID  720
ALLEKTIKHM LFLQNVAKHA DKLKESGEPK MLCKERGIFL EIADQIRGLG LTILKGVMEV  780
RKDKIWARFA VEANKDVTRM EIFLSLVHLL EPSTGSSILS AVRSFSSVQQ VPPE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540336.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLA0A0E0CAQ70.0A0A0E0CAQ7_9ORYZ; Uncharacterized protein
STRINGOMERI01G34730.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161891314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.15e-43conserved peptide upstream open reading frame 7