PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540284.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 103aa MW: 10822.3 Da PI: 4.532 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 45.7 | 1.1e-14 | 6 | 83 | 110 | 190 |
GRAS 110 ervHiiDfdis.qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 vH++D++ + QW+ L + a+Rp+gpp lR+T+v++ s++ l++ + a A++l+++++f++ v +++e+l+ KN540284.1_FGP004 6 GVVHVVDLGGGvDANQWVELVRLVAARPGGPPgLLRLTVVNE----SEDFLSAAAAYVATEAQRLDLSLQFHP-VLSSIEELS 83 689*****9763699*************999989********....9**************************.678888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.495 | 1 | 103 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-12 | 6 | 83 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MEAERGVVHV VDLGGGVDAN QWVELVRLVA ARPGGPPGLL RLTVVNESED FLSAAAAYVA 60 TEAQRLDLSL QFHPVLSSIE ELSATATGSI GSRLVVIPGR IFS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540284.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120987 | 1e-146 | AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence. | |||
GenBank | AC136218 | 1e-146 | AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence. | |||
GenBank | AP014961 | 1e-146 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881539.1 | 5e-51 | scarecrow-like protein 3 | ||||
TrEMBL | I1PV42 | 2e-49 | I1PV42_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6AUP1 | 2e-49 | Q6AUP1_ORYSJ; Os05g0378200 protein | ||||
STRING | OS05T0378200-00 | 3e-50 | (Oryza sativa) | ||||
STRING | ORGLA05G0124000.1 | 3e-50 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17063 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-09 | scarecrow-like 3 |