PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540283.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 682aa    MW: 75706.5 Da    PI: 6.1574
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540283.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20103159157
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  KN540283.1_FGP006 103 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 159
                        688999************************************************995 PP
2START203.68e-642474721206
                        HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT CS
              START   1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdet 75 
                        ela +a++elv++a+++ep+W+  +         e + ++e+ + f+++ +      ++ea+r+s+vv+m++a+lve+l+d ++    +++ 
  KN540283.1_FGP006 247 ELAVAAMEELVRMAQLDEPLWSVAPpldaaaaamETLSEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNI 338
                        57899********************9*9999999999999999999887779*******************************666666666 PP

                        -SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
              START  76 lakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                        + +a tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ p    v +++++pSg+li++++ng
  KN540283.1_FGP006 339 VSRAVTLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQYADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNG 426
                        66*****************************************************************98....7****************** PP

                        EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        +skvtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+
  KN540283.1_FGP006 427 YSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 472
                        ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-2283158IPR009057Homeodomain-like
SuperFamilySSF466895.43E-2090160IPR009057Homeodomain-like
PROSITE profilePS5007117.07100160IPR001356Homeobox domain
SMARTSM003892.3E-20101164IPR001356Homeobox domain
CDDcd000861.02E-19102161No hitNo description
PfamPF000465.3E-18103158IPR001356Homeobox domain
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084841.756238475IPR002913START domain
SuperFamilySSF559615.49E-35240474No hitNo description
CDDcd088754.02E-121242471No hitNo description
SMARTSM002349.8E-58247472IPR002913START domain
PfamPF018527.3E-54248472IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-6312468IPR023393START-like domain
SuperFamilySSF559611.34E-9489648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MERREIFQVA DLAHILRGKP VDHLQQPNLL DNHQFQQAFQ QQQQQQHHLL DQIPATTAES  60
GDNMIRSRAS DPLGGDEFES KSGSENVDGV SVDDQDPNQR PRKKRYHRHT QHQIQEMEAF  120
FKECPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKNQ HERHENSQLR SDNEKLRAEN  180
MRYKEALSSA SCPNCGGPAA LGEMSFDEHH LRIENARLRE EIDRISAIAA KYVGKPMSEV  240
DKPMIVELAV AAMEELVRMA QLDEPLWSVA PPLDAAAAAM ETLSEEEYAR MFPRGLGPKQ  300
YGLRSEASRD SAVVIMTHAN LVEILMDANQ YAAVFSNIVS RAVTLEVLST GVAGNYNGAL  360
QVMSVEFQVP SPLVPTRESY FVRYCKQYAD GTWAVVDVSL DSLRPSPVLK CRRRPSGCLI  420
QEMPNGYSKV TWVEHVEVDD RSVHNIYKLL VNSGLAFGAR RWVGTLDRQC ERLASVMASN  480
IPNVITSSEG RKSMLKLAER MVVSFCGGVT ASVAHQWTTL SGSGAEDVRV MTRKSVDDPG  540
RPPGIVLNAA TSFWLPWDIL SNGGIVQEMA HIANGRDQGN CVSLLRVNSS NSNQSNMLIL  600
QESCTDASGS YVIYAPVDVV AMNIVLNGGD PDYVALLPSG FAILPDGPAA HDGGDEQQNF  660
GAFISGKSRT HLRLSLPCGA HI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540283.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015630.0AK101563.1 Oryza sativa Japonica Group cDNA clone:J033050E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636340.10.0homeobox-leucine zipper protein ROC2 isoform X2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A0E0PEE90.0A0A0E0PEE9_ORYRU; Uncharacterized protein
STRINGORUFI04G27800.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]