PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540273.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 21964.8 Da PI: 8.4872 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.7 | 2.3e-44 | 39 | 137 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql++ KN540273.1_FGP002 39 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQ 130 7******************************************************************************************* PP DUF260 93 elallke 99 el++++ KN540273.1_FGP002 131 ELSRARF 137 **99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.031 | 38 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-44 | 39 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAASSSASSL PLSSGSVITV SSSPAAGASS GGGGGTGSPC AACKFLRRKC QPDCVFAPYF 60 PPDNPQKFVH VHRVFGASNV TKLLNELHPY QREDAVNSLA YEADMRLRDP VYGCVGVISV 120 LQHQLRQLQQ ELSRARFELS KYQAAVAVSS SNGQAAAAAM ADHFIGSAVQ PNCTQNFISG 180 GGVAAAAIGV GGGAGDYSVF HAMPCKFQLK PV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-56 | 35 | 142 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-56 | 35 | 142 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540273.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134933 | 0.0 | AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence. | |||
GenBank | AC137617 | 0.0 | AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640070.1 | 6e-88 | LOB domain-containing protein 6 | ||||
Refseq | XP_015640071.1 | 6e-88 | LOB domain-containing protein 6 | ||||
Refseq | XP_025881387.1 | 6e-88 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 2e-83 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | Q6AT73 | 1e-86 | Q6AT73_ORYSJ; Os05g0417000 protein | ||||
STRING | OS05T0417000-00 | 2e-87 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 4e-50 | LBD family protein |