PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540216.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 210aa    MW: 24147 Da    PI: 5.1478
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540216.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.8e-2170121556
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         ++t++q++ Le++Fe++ y+  ++r eLAkklg++erqVk+WFqNrR+++k
  KN540216.1_FGP005  70 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 121
                        579***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-2155122IPR009057Homeodomain-like
PROSITE profilePS5007116.82763123IPR001356Homeobox domain
SuperFamilySSF466896.27E-1964121IPR009057Homeodomain-like
SMARTSM003891.2E-1765127IPR001356Homeobox domain
CDDcd000861.61E-1867121No hitNo description
PfamPF000461.7E-1870121IPR001356Homeobox domain
PRINTSPR000311.5E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000311.5E-6103119IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQKDVIHSIP DRLIMDNGSQ QESSNLHVLH LPFASVIGVE DHTEEADDAA VDYHDDSSEG  60
QDEVSNKRMK RHTDDQIKHL ESVFERCTYL GGNQRVELAK KLGMEERQVK FWFQNRRTRK  120
KMHDERQEGM WLQEENDVLH AENKVLKEAM WANICFTCGS PVVPAIPTVQ HRYLSFQNMR  180
LADELQHATA VFNMVAQDAD VGLATSVPFD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540216.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042981e-150AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09.
GenBankAP0056901e-150AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14.
GenBankAP0149631e-150AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-150CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0EAI91e-141A0A0E0EAI9_9ORYZ; Uncharacterized protein
STRINGOMERI07G09630.11e-142(Oryza meridionalis)
STRINGORUFI07G12260.11e-142(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.12e-32homeodomain GLABROUS 1