PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540216.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 196aa MW: 22429.6 Da PI: 10.2677

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540216.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.5e-16	23	67	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l KN540216.1_FGP003 23 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 67 7***************************.*********9886 PP
2	Myb_DNA-binding	24.4	6.6e-08	75	118	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l++++ +lG + Wk I r + gRt k+rw+ ++ KN540216.1_FGP003 75 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 118 79**************99.****9.*********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.084	16	71	IPR017930	Myb domain
SMART	SM00717	5.5E-13	20	69	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.43E-23	21	114	IPR009057	Homeodomain-like
CDD	cd00167	1.19E-13	23	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-19	23	75	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-14	23	67	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.364	68	118	IPR017877	Myb-like domain
SMART	SM00717	8.4E-4	72	120	IPR001005	SANT/Myb domain
CDD	cd00167	2.44E-4	75	117	No hit	No description
Pfam	PF00249	5.6E-6	75	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-9	76	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MATPPLPPPP RARCVVRLKL PPAWTPEEDA RLQRLAKENG FRRWSRVARS MPRRSARSCR 60 DRWRHHLARD VYHRPFTARD DDELLRLHYR LGDRWKEIGR AVYGRTSRVM KHRWRELRRG 120 GFPAAATRKE QAPAMDADDM VESEMEESDQ SLPPLELQHS LADALASSFG SCSLAHDHAM 180 DPLAGSLALG FACMAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-17	24	114	7	97	MYB PROTO-ONCOGENE PROTEIN
1h88_C	8e-17	24	114	61	151	MYB PROTO-ONCOGENE PROTEIN
1h89_C	8e-17	24	114	61	151	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-17	24	114	7	97	C-Myb DNA-Binding Domain
1msf_C	2e-17	24	114	7	97	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540216.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005200	0.0	AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645964.1	1e-116	transcription factor MYB73
TrEMBL	A0A0E0AJ08	1e-119	A0A0E0AJ08_9ORYZ; Uncharacterized protein
STRING	OGLUM07G11720.1	1e-119	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12569	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	7e-19	myb domain protein 70