PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540209.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 375aa MW: 40758.7 Da PI: 8.2082

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540209.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.5	6.8e-09	254	301	14	62
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 R + +rsR RK+++i+ Le+ v++L+ N aL e+++l+ ++ +l++ KN540209.1_FGP001 254 RRSGQRSRVRKLQYIADLERTVDSLQLRN-ALSMENKQLRRQITSLQQA 301 77899**********************.7***********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	254	300	No hit	No description
CDD	cd14703	2.12E-13	254	302	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MSRSPHLPPR CPPLGPQITR RDDSLFTQSC RFPSEDPFVG EPPCWLDDLL ADSGKSHTLP 60 PLRRACSDSD AILDVLTSFQ SPIYPIDEGD PQPVGEAGES FNAAAEGGGS GAGIEGSCVY 120 GPNSPRQKTR LTSSESSMVN AVLENVPSNP LQYLMIDATS GVNCNVGAAN GTGDTGDAVC 180 HADQEKSLKR KKVARRESHG VRLGGAKRQW EDGEGGAVLQ EVKQRNGDES LTPIPEVVSE 240 AGWWAVTGRS MGWRRSGQRS RVRKLQYIAD LERTVDSLQL RNALSMENKQ LRRQITSLQQ 300 AKLIKDGQTQ MLKKETERLK QLSVRHRRSR SVTSCFEANS FGGGDPSAIN WQMLDMSKLS 360 LNGGAVVPPR GGYGM

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MSRSPHLPPR CPPLGPQITR RDDSLFTQSC RFPSEDPFVG EPPCWLDDLL ADSGKSHTLP  60
PLRRACSDSD AILDVLTSFQ SPIYPIDEGD PQPVGEAGES FNAAAEGGGS GAGIEGSCVY  120
GPNSPRQKTR LTSSESSMVN AVLENVPSNP LQYLMIDATS GVNCNVGAAN GTGDTGDAVC  180
HADQEKSLKR KKVARRESHG VRLGGAKRQW EDGEGGAVLQ EVKQRNGDES LTPIPEVVSE  240
AGWWAVTGRS MGWRRSGQRS RVRKLQYIAD LERTVDSLQL RNALSMENKQ LRRQITSLQQ  300
AKLIKDGQTQ MLKKETERLK QLSVRHRRSR SVTSCFEANS FGGGDPSAIN WQMLDMSKLS  360
LNGGAVVPPR GGYGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	253	259	RRSGQRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540209.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063644	0.0	AK063644.1 Oryza sativa Japonica Group cDNA clone:001-118-H05, full insert sequence.
GenBank	AP004753	0.0	AP004753.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0508B05.
GenBank	AP005609	0.0	AP005609.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	HQ324808	0.0	HQ324808.1 Oryza sativa Japonica Group clone KCS608G03 b-zip protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623493.1	0.0	basic leucine zipper 34
TrEMBL	A3A7Q8	0.0	A3A7Q8_ORYSJ; Uncharacterized protein
STRING	OS02T0538900-01	0.0	(Oryza sativa)
STRING	OBART02G19520.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8137	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	2e-14	bZIP family protein