PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540208.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 118aa MW: 13626.1 Da PI: 10.9787 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 53.7 | 4.1e-17 | 40 | 70 | 1 | 31 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsag 31 ldDg++WrKYG+K vk+s++pr+YYrC+ ag KN540208.1_FGP006 40 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAAG 70 59**************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-16 | 28 | 70 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-15 | 32 | 71 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.775 | 35 | 70 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-8 | 40 | 78 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-12 | 41 | 69 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MAASLGLCHE TSLRYESEEK MRGRVNGRIG FRTRSEVEVL DDGFKWRKYG KKAVKSSPNP 60 RNYYRCSAAG VKLIRCAIFL IRAQEQGKPL QKLKIGFVKA RFLKIPNYIF SQPRMIII |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540208.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109578 | 1e-64 | AK109578.1 Oryza sativa Japonica Group cDNA clone:002-135-F06, full insert sequence. | |||
GenBank | AP002486 | 1e-64 | AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03. | |||
GenBank | AP014957 | 1e-64 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341854 | 1e-64 | AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds. | |||
GenBank | CT831287 | 1e-64 | CT831287.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI020N10, full insert sequence. | |||
GenBank | HQ858826 | 1e-64 | HQ858826.1 Oryza sativa Japonica Group isolate UT1324 WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638018.1 | 3e-32 | probable WRKY transcription factor 50 | ||||
TrEMBL | A0A0E0DMW6 | 2e-31 | A0A0E0DMW6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G05120.1 | 4e-32 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-22 | WRKY DNA-binding protein 50 |