PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540203.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 92aa MW: 10495.8 Da PI: 9.3308 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.8 | 1.1e-16 | 2 | 29 | 8 | 35 |
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 +TplWR+gp+g+k+LCnaCG++yrkk++ KN540203.1_FGP003 2 STPLWRNGPRGPKSLCNACGIRYRKKRR 29 7************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.486 | 1 | 25 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-14 | 2 | 29 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-12 | 2 | 29 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 1.5E-5 | 2 | 49 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 7.65E-11 | 2 | 29 | No hit | No description |
SuperFamily | SSF57716 | 7.13E-9 | 2 | 28 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MSTPLWRNGP RGPKSLCNAC GIRYRKKRRE ALGLDAGEGG AERQEKKKSK RERGEEVTME 60 LRMVGFGKEG LSVETNQSHI QTEDWRMESD ND |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540203.1_FGP003 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073709 | 6e-91 | AK073709.1 Oryza sativa Japonica Group cDNA clone:J033058P14, full insert sequence. | |||
GenBank | CT831941 | 6e-91 | CT831941.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631979.1 | 5e-40 | GATA transcription factor 16 | ||||
TrEMBL | A0A0D3FQY4 | 1e-38 | A0A0D3FQY4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZFB6 | 1e-38 | A0A0D9ZFB6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GVZ0 | 1e-38 | A0A0E0GVZ0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P3H0 | 1e-38 | A0A0E0P3H0_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XNM3 | 1e-38 | A2XNM3_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q850Z5 | 1e-38 | Q850Z5_ORYSJ; Expressed protein | ||||
STRING | OGLUM03G39650.1 | 2e-39 | (Oryza glumipatula) | ||||
STRING | ORUFI03G41540.1 | 2e-39 | (Oryza rufipogon) | ||||
STRING | OS03T0831200-01 | 2e-39 | (Oryza sativa) | ||||
STRING | ONIVA03G41600.1 | 2e-39 | (Oryza nivara) | ||||
STRING | OBART03G39750.1 | 2e-39 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 1e-13 | GATA transcription factor 19 |