PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540177.1_FGP004

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 310aa MW: 34832.6 Da PI: 4.1675

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540177.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	85.9	5.6e-27	1	78	18	95
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +apyfpa+q+++f n+h+lFG+sn+lk+l++l++e +dam++l+y+Ae+ra+dPv G+++vi +l++qle ael+ KN540177.1_FGP004 1 MAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAELN 78 59*********************************************************************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	5.9E-25	1	78	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	15.085	1	84	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAPYFPADQQ RRFLNAHRLF GVSNILKTLR HLKPELCDDA MRTLIYQAEM RAHDPVGGCC 60 RVICDLERQL ELDTAELNTP LLLSAEQEVV DALYANQEAD AAILHADGHH NQDESQREHH 120 HGQPQQLYDY FYYDSTAGDD VSSKPNLDIN VDGMQHFDFD TNYDAEHKVE LTSDHQMPVG 180 VDEHNHIDDK GFEIKSAPSL VDVFDLRQEE EQVQTVDVNT DIEVKEMVDM NADIDVKTMV 240 DENSNIDIIK TMVDVNADIV DVVKTVVDVN GDIGVKEELP ELENGKIIAG DATQMAESSH 300 CRLGLGVSSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-14	1	75	28	107	LOB family transfactor Ramosa2.1
5ly0_B	2e-14	1	75	28	107	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540177.1_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005388	0.0	AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883262.1	0.0	uncharacterized protein LOC9266602
TrEMBL	A0A0D3H014	0.0	A0A0D3H014_9ORYZ; Uncharacterized protein
TrEMBL	I1QIH2	0.0	I1QIH2_ORYGL; Uncharacterized protein
STRING	ORGLA08G0122300.1	0.0	(Oryza glaberrima)
STRING	OBART08G13930.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-21	LOB domain-containing protein 22