PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540135.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 273aa    MW: 29966 Da    PI: 8.7748
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540135.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.12.2e-31112168158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        d+p+YVNaKQy++I++RR++Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  KN540135.1_FGP001 112 DAPIYVNAKQYSAIMRRRHARAKAERENRL-VKARKPYLHESRHLHAMRRARGSGGRF 168
                        68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.9E-35110171IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.728111171IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.4E-23114136IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.6E-28114168IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860116136IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.4E-23145168IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSPEGVVPRA QTPLDPPPVP AMDRGVPEIL NFSMVPAKSK GEKCSEHSTT IALQSPFAEY  60
NGCFELGLGQ SVVPSNYPYA DQQYGLLSPY GVRPTKEQPS GRILIPPNMP ADAPIYVNAK  120
QYSAIMRRRH ARAKAERENR LVKARKPYLH ESRHLHAMRR ARGSGGRFLN TKKETNGKTT  180
GGGRKVMDII IPPLCPAASP SSEQCNPSSV SSLSGSEVSS IYEHEDMDHF HSFDHLRTHF  240
FTPLPSLMDV EHGAGNPFKW TAASDGCCDL LKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-17112176266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540135.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880320.0AB288032.1 Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0737420.0AK073742.1 Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618449.10.0nuclear transcription factor Y subunit A-10
RefseqXP_015618450.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A0D3HWU50.0A0A0D3HWU5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BVC30.0A0A0E0BVC3_9ORYZ; Uncharacterized protein
STRINGOGLUM12G20730.10.0(Oryza glumipatula)
STRINGOBART12G19060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.37e-29nuclear factor Y, subunit A10