PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540122.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 347aa    MW: 38149.3 Da    PI: 4.5461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540122.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-1999148255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +++G+r+++ +g+W+AeIrdp++     r++lg+f ++eeAa+a++a +++++g
  KN540122.1_FGP002  99 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 148
                        69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-3199157IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2199157IPR016177DNA-binding domain
SMARTSM003802.7E-3599162IPR001471AP2/ERF domain
PROSITE profilePS5103223.31499156IPR001471AP2/ERF domain
CDDcd000188.27E-3199157No hitNo description
PfamPF008471.9E-11100148IPR001471AP2/ERF domain
PRINTSPR003673.5E-10100111IPR001471AP2/ERF domain
PRINTSPR003673.5E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAKSSSLSKT KKQQQQKKKN KGARRLPLRQ EEEEEEDFEA DFEEFEVDSG QWEVESDADE  60
AKPLAAPRSG FAKGGLKNTT VAGADGPAAR SAKRKRKNQF RGIRQRPWGK WAAEIRDPRK  120
GVRVWLGTFN SPEEAARAYD AEARRIRGKK AKVNFPDGAP VASQRSHAEP SSMNMPAFSI  180
EEKPAVMSAG NNTMYNTNAY AYPAVEYTLQ EPFVQIQNVS FVPAMNAIED TFVNLSSDQG  240
SNSFGCSDFS QENDIKTPDI TSMLAPTMTG VDDSAFLQNN ASDAMVPPVM GNASIDLANL  300
EPYMKFLIDG GSDESIDTLL SSDGSQDVAS SMDLWSFDDM PVSAEFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1999156563ATERF1
3gcc_A6e-1999156563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540122.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1907700.0AF190770.1 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds.
GenBankAK0607420.0AK060742.1 Oryza sativa Japonica Group cDNA clone:001-032-E01, full insert sequence.
GenBankAK0698330.0AK069833.1 Oryza sativa Japonica Group cDNA clone:J023031B06, full insert sequence.
GenBankDQ8492890.0DQ849289.1 Oryza sativa (indica cultivar-group) ethylene-responsive factor 15 (ERF-15) mRNA, complete cds.
GenBankEU8372570.0EU837257.1 Oryza sativa Japonica Group clone KCS063A06 EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643752.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-116ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0E0A6770.0A0A0E0A677_9ORYZ; Uncharacterized protein
STRINGOGLUM06G06300.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.26e-33related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]