PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540097.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 641aa MW: 72715.1 Da PI: 6.8508 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.7 | 4.2e-12 | 52 | 106 | 2 | 58 |
--SS-EEEEEEE--TT-SS-..EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefp..rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy Wr Gq + +g p s Y+C++a+C v+k v ++a ve+ Y+g+Hnh KN540097.1_FGP006 52 DDGYYWRMTGQSTTQGESSPtmLSHYQCAQANCVVQKTVAHTA----DVETFYRGRHNH 106 8*************9977773369***************9988....5899******** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 9.68E-11 | 51 | 106 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-4 | 51 | 108 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-10 | 51 | 106 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.43 | 52 | 106 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-10 | 52 | 106 | IPR003657 | WRKY domain |
SMART | SM00614 | 2.1E-14 | 177 | 228 | IPR003656 | Zinc finger, BED-type |
PROSITE profile | PS50808 | 9.308 | 177 | 242 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 5.59E-7 | 180 | 227 | No hit | No description |
Pfam | PF02892 | 9.4E-6 | 180 | 224 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF53098 | 1.44E-41 | 273 | 625 | IPR012337 | Ribonuclease H-like domain |
Pfam | PF14372 | 1.5E-23 | 514 | 609 | IPR025525 | hAT-like transposase, RNase-H fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MADQGFRPFS ALMSAPSTAQ QHVGSSFSTA VVQVAAAQQS HTDHGNICLA DDDGYYWRMT 60 GQSTTQGESS PTMLSHYQCA QANCVVQKTV AHTADVETFY RGRHNHLRQS DRLEPMSQVG 120 VLVEASDAAG AAAGPSVPET ENGDDQSSGS RNEDDAGDVE MDEDAAAGDP NAMQRRKLKS 180 KVWKEFKLVF KDGKLHTAIC NHCKLRLVAE TRNGTSHLRR HLKICPEKAG TSRVQKKRRS 240 STSQSQPDLP VSENLENVED KFISVYEKEK LKLKEKIIAT PGGVFLSVNK WYSGSYETGI 300 VCLTVHFIDE EWKINRKTIR CCLSESDGLD LNLFPHWQSE IANYEDDDKM VLKKVVRDWC 360 LEPKLLGVTL EGSVDKKATI SLEDDLTTGK NYLVAKCKLL TIPCMVDGLD DLMQYTVGRE 420 VRSMWSRYMT NTPERKLKCQ EVVSQLQLDR PSFGSKYRYL TFYWCEAALQ FIKSFPLSNG 480 SERPSLDDLE ATENFCKIAR AIYHATKAFY EPYNLTFNSY FHVIWSLRAT LQELPRIKNI 540 ERVIKVKNMQ EKFDNHWKKW YLWLSIAVVL DPRYKLAFIE LRFREAFSQD AGTYISEVRA 600 KFYELYIQYS HVNEQSNEIL NQGNNGSGTA DADNGNNITL S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540097.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005416 | 0.0 | AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23. | |||
GenBank | AP005499 | 0.0 | AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649908.1 | 0.0 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 | ||||
Refseq | XP_015649909.1 | 0.0 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 | ||||
Refseq | XP_015649910.1 | 0.0 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 | ||||
Refseq | XP_015649911.1 | 0.0 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 | ||||
Refseq | XP_015649912.1 | 0.0 | zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 | ||||
TrEMBL | A0A0P0XDB5 | 0.0 | A0A0P0XDB5_ORYSJ; Os08g0198400 protein | ||||
STRING | ORUFI08G06360.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14032 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 6e-08 | WRKY family protein |