PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540097.1_FGP006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 641aa    MW: 72715.1 Da    PI: 6.8508
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540097.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.74.2e-1252106258
                        --SS-EEEEEEE--TT-SS-..EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefp..rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        dDgy Wr  Gq + +g   p   s Y+C++a+C v+k v ++a     ve+ Y+g+Hnh
  KN540097.1_FGP006  52 DDGYYWRMTGQSTTQGESSPtmLSHYQCAQANCVVQKTVAHTA----DVETFYRGRHNH 106
                        8*************9977773369***************9988....5899******** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.68E-1151106IPR003657WRKY domain
SMARTSM007741.5E-451108IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-1051106IPR003657WRKY domain
PROSITE profilePS5081110.4352106IPR003657WRKY domain
PfamPF031064.5E-1052106IPR003657WRKY domain
SMARTSM006142.1E-14177228IPR003656Zinc finger, BED-type
PROSITE profilePS508089.308177242IPR003656Zinc finger, BED-type
SuperFamilySSF576675.59E-7180227No hitNo description
PfamPF028929.4E-6180224IPR003656Zinc finger, BED-type
SuperFamilySSF530981.44E-41273625IPR012337Ribonuclease H-like domain
PfamPF143721.5E-23514609IPR025525hAT-like transposase, RNase-H fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MADQGFRPFS ALMSAPSTAQ QHVGSSFSTA VVQVAAAQQS HTDHGNICLA DDDGYYWRMT  60
GQSTTQGESS PTMLSHYQCA QANCVVQKTV AHTADVETFY RGRHNHLRQS DRLEPMSQVG  120
VLVEASDAAG AAAGPSVPET ENGDDQSSGS RNEDDAGDVE MDEDAAAGDP NAMQRRKLKS  180
KVWKEFKLVF KDGKLHTAIC NHCKLRLVAE TRNGTSHLRR HLKICPEKAG TSRVQKKRRS  240
STSQSQPDLP VSENLENVED KFISVYEKEK LKLKEKIIAT PGGVFLSVNK WYSGSYETGI  300
VCLTVHFIDE EWKINRKTIR CCLSESDGLD LNLFPHWQSE IANYEDDDKM VLKKVVRDWC  360
LEPKLLGVTL EGSVDKKATI SLEDDLTTGK NYLVAKCKLL TIPCMVDGLD DLMQYTVGRE  420
VRSMWSRYMT NTPERKLKCQ EVVSQLQLDR PSFGSKYRYL TFYWCEAALQ FIKSFPLSNG  480
SERPSLDDLE ATENFCKIAR AIYHATKAFY EPYNLTFNSY FHVIWSLRAT LQELPRIKNI  540
ERVIKVKNMQ EKFDNHWKKW YLWLSIAVVL DPRYKLAFIE LRFREAFSQD AGTYISEVRA  600
KFYELYIQYS HVNEQSNEIL NQGNNGSGTA DADNGNNITL S
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540097.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649908.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649909.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649910.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649911.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649912.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
TrEMBLA0A0P0XDB50.0A0A0P0XDB5_ORYSJ; Os08g0198400 protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.16e-08WRKY family protein