PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540097.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1140aa    MW: 127791 Da    PI: 6.1286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540097.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.22.6e-16262317359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        DgynWr  GqK+v+g  + + YY C++a+C + k v rsa d+++ +++ +g+Hnh+
  KN540097.1_FGP005 262 DGYNWRICGQKVVQGGCHQKFYYECAHANCDAEKSVTRSA-DGQIKKTVCKGSHNHP 317
                        9***************************************.***************8 PP
2WRKY51.22.6e-16474529359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        DgynWr  GqK+v+g  + + YY C++a+C + k v rsa d+++ +++ +g+Hnh+
  KN540097.1_FGP005 474 DGYNWRICGQKVVQGGCHQKFYYECAHANCDAEKSVTRSA-DGQIKKTVCKGSHNHP 529
                        9***************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.45E-16258318IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-14260318IPR003657WRKY domain
SMARTSM007745.2E-11260318IPR003657WRKY domain
PfamPF031062.7E-14262317IPR003657WRKY domain
PROSITE profilePS5081114.114262319IPR003657WRKY domain
SuperFamilySSF1182904.45E-16470530IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-14472530IPR003657WRKY domain
SMARTSM007745.2E-11472530IPR003657WRKY domain
PROSITE profilePS5081114.114474531IPR003657WRKY domain
PfamPF031062.7E-14474529IPR003657WRKY domain
PROSITE profilePS5080811.656640699IPR003656Zinc finger, BED-type
SMARTSM006143.2E-15640691IPR003656Zinc finger, BED-type
SuperFamilySSF576674.52E-7643690No hitNo description
PfamPF028922.0E-7643687IPR003656Zinc finger, BED-type
SuperFamilySSF530987.51E-268341125IPR012337Ribonuclease H-like domain
PfamPF143724.1E-2210121107IPR025525hAT-like transposase, RNase-H fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1140 aa     Download sequence    Send to blast
MANWKSYFNA KDSSYYDSEG TDFAVIKVKE AVQDWNLEHK LLGIALRSNL GNDVILDLDE  60
SMAGAVQNYL LAKHKLLAVP CMIDALHGLF GYDLGQFVQK TIKEWFEYMT CSELRLEKYK  120
EILSGLHPIR PSFGSQQWHL TFYLFEAALQ FNKALPNPEE MDLESKAVSY LITGAIIYRW  180
IDTISLSIEP STWMIWKERS ARIIENMSRP LLTLCCESDA QLNMQQQNAG CSSNPAPAVI  240
QMPALPSHTD YGGIYPNPTE YDGYNWRICG QKVVQGGCHQ KFYYECAHAN CDAEKSVTRS  300
ADGQIKKTVC KGSHNHPRSS ERVFGDGSAT LDAIPVGEIL QAAGVIRPSV AMPRNEEEDE  360
LQSGSSDSEE DDASEARVDG DGAAVEQITL DFFMPCTPNV LAFQPGRKEM ENQSGQAPDG  420
MADQRFRSWL TEQLNMQQQN AGCSSNPAPA VIQMPALPSH TDYGGIYPNP TEYDGYNWRI  480
CGQKVVQGGC HQKFYYECAH ANCDAEKSVT RSADGQIKKT VCKGSHNHPR SSERVFGDGS  540
ATLDAIPVGE ILQAAGVIRP SVAMPRNEEE DELQSGSSDS EEDDASEARV DGDGAGADAN  600
NAIERHGAAQ EITAQTATEV DVTGNDCQQR KNYCRSGNRR SKSKVWEEFT AVFSGGKIQN  660
AECKHCKKCL SGKTSGGTSH LRRHLKICPA QCRNTRVQQN WSSSRLDSSV ANNWKFHQET  720
SLELLTRALV SNLCPFSVTS GANFRKFLTG ISPAYSIVPQ ASVEAKFLSI FQNEKVKLKE  780
AIALTPGGVF LSVTRCACSG IDVCEAEHYL SVLPNWKSYS NIRMAKYVLG GTLKTNKALI  840
KEAAQDWNLE KKLLGIAFPM NLGNEVILDL EETMIGIGAA QNYLLAKYKL LTVPCMIDAL  900
HGFFGYSLEN FVLETSREWF EYMTCSALRL EKYKEILSRL HLNRPSFGSK QWYLTFYLFE  960
ATLQFNKELP NPEEMDLQNY PLKPSFQRLE AAKNFCDLAR PIYHAVDVLS RHNATFNSHF  1020
HAIWNLGTAL RESSVKFNIE RIINVDDMKK KFDNLWRKCN LWLSMAVFLD PRFKLRYLEH  1080
CFKQVFGTGA KLILEVRAKI YELFLQYSCN ADQQSDELLN HWNTDLQMGR HETGDENGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540097.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649039.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like
RefseqXP_025883155.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like
TrEMBLQ0J7F50.0Q0J7F5_ORYSJ; Os08g0198000 protein
STRINGOS08T0198100-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.22e-20WRKY family protein