PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540070.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 173aa MW: 19770.3 Da PI: 4.4291 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103 | 2.5e-32 | 1 | 86 | 9 | 103 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100 ++ed++++e+isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv ++ weF+++ F++g+k+ll i+r+ KN540070.1_FGP004 1 MVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WEFANDCFRRGEKHLLGGIQRR 83 89********************************************************999.........********************** PP XXX CS HSF_DNA-bind 101 kse 103 k + KN540070.1_FGP004 84 KGS 86 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-33 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.9E-44 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-28 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.39E-31 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.7E-9 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 33 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-9 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MVEDPSTDET ISWNDSGTAF VVWRPAEFAR DLLPKHFKHS NFSSFVRQLN TYGFKKVVAD 60 RWEFANDCFR RGEKHLLGGI QRRKGSREEN GEDEEEEEEE EEEGADEDGE DEEVEEEDDD 120 ERERHAARRV PVREGKVRRT TELSDLDVLA LSVRAAAAAR PGGASRDRKS SVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-23 | 1 | 86 | 27 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540070.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY344483 | 1e-137 | AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691545.1 | 1e-57 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | B9FC16 | 2e-58 | B9FC16_ORYSJ; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 2e-46 | HSF family protein |