PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540047.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 587aa MW: 62327.7 Da PI: 4.8996 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 21.6 | 4.2e-07 | 360 | 385 | 1 | 26 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek+++le+l+k+Fs+++kdAA++Lg KN540047.1_FGP004 360 AEKSVTLEELQKHFSGSLKDAARSLG 385 5899*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54277 | 8.18E-19 | 474 | 546 | No hit | No description |
SMART | SM00666 | 1.7E-17 | 479 | 575 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 15.86 | 479 | 575 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.1E-11 | 480 | 552 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.57E-36 | 480 | 562 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.7E-22 | 480 | 546 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MQMEMEMERW ERGRGRGIAG DGGGGGGRRG EAADRAGAAA VQGGGGGGWM VQVWAPARDG 60 ARRVLATRGQ PFVLASQCHR LFQYRTVSLT RVFPVGGAAA ADEQGLPARA FDAVAPEWTP 120 NVQCCGSGEY ARISYALIYD IQGSLALPIL DPDDASSPLA VLELVTTAPL LRVSGEVANL 180 CNALQAVSLR GAGICNSAAE CYSLALNQIA NRDATRAAMA EVSELLTTVC EAHKLPLAQT 240 WLFLPPDCTG VAEQKAAVDA ISATIKQCSG NLKAIVISNL DDLLLDNLDD LLLDTMADGD 300 QQLRHEMDDL GDDQRCSDEE DLQLLENTNI GELNIHNADQ IRNEDPTSQV GKNKTRRGKA 360 EKSVTLEELQ KHFSGSLKDA ARSLGETMVM TESWIIKVNR SLDKMKRVME SVNCSPSPPV 420 AMLMPAHPAL LLPPPPPPPR PCLSSTVGET SSHGSCQAPP PHAKTALRKP PRCGNGDGVV 480 TIKASHRGDI IRFRVPCSAG VAAVKAEVAK RLSLDAGAFD VKYLDDDHEW VLLSCDADFQ 540 ECLDVVPALP SMSVTARSGS GAAAPVVVRL MVQEVADNIG SSCASSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540047.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005474 | 0.0 | AP005474.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646856.2 | 0.0 | PREDICTED: protein NLP3-like | ||||
TrEMBL | A0A0E0JV98 | 0.0 | A0A0E0JV98_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G02320.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6269 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 4e-45 | Nin-like family protein |