PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540047.1_FGP004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 587aa    MW: 62327.7 Da    PI: 4.8996
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540047.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK21.64.2e-07360385126
             RWP-RK   1 aekeisledlskyFslpikdAAkeLg 26 
                        aek+++le+l+k+Fs+++kdAA++Lg
  KN540047.1_FGP004 360 AEKSVTLEELQKHFSGSLKDAARSLG 385
                        5899*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542778.18E-19474546No hitNo description
SMARTSM006661.7E-17479575IPR000270PB1 domain
PROSITE profilePS5174515.86479575IPR000270PB1 domain
PfamPF005641.1E-11480552IPR000270PB1 domain
CDDcd064071.57E-36480562No hitNo description
Gene3DG3DSA:3.10.20.2401.7E-22480546No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MQMEMEMERW ERGRGRGIAG DGGGGGGRRG EAADRAGAAA VQGGGGGGWM VQVWAPARDG  60
ARRVLATRGQ PFVLASQCHR LFQYRTVSLT RVFPVGGAAA ADEQGLPARA FDAVAPEWTP  120
NVQCCGSGEY ARISYALIYD IQGSLALPIL DPDDASSPLA VLELVTTAPL LRVSGEVANL  180
CNALQAVSLR GAGICNSAAE CYSLALNQIA NRDATRAAMA EVSELLTTVC EAHKLPLAQT  240
WLFLPPDCTG VAEQKAAVDA ISATIKQCSG NLKAIVISNL DDLLLDNLDD LLLDTMADGD  300
QQLRHEMDDL GDDQRCSDEE DLQLLENTNI GELNIHNADQ IRNEDPTSQV GKNKTRRGKA  360
EKSVTLEELQ KHFSGSLKDA ARSLGETMVM TESWIIKVNR SLDKMKRVME SVNCSPSPPV  420
AMLMPAHPAL LLPPPPPPPR PCLSSTVGET SSHGSCQAPP PHAKTALRKP PRCGNGDGVV  480
TIKASHRGDI IRFRVPCSAG VAAVKAEVAK RLSLDAGAFD VKYLDDDHEW VLLSCDADFQ  540
ECLDVVPALP SMSVTARSGS GAAAPVVVRL MVQEVADNIG SSCASSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540047.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054740.0AP005474.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646856.20.0PREDICTED: protein NLP3-like
TrEMBLA0A0E0JV980.0A0A0E0JV98_ORYPU; Uncharacterized protein
STRINGOPUNC02G02320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.14e-45Nin-like family protein