PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540044.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1838aa MW: 206848 Da PI: 6.6598

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540044.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52	1.2e-16	3	52	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k KN540044.1_FGP003 3 SPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 52 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.208	1	53	IPR001356	Homeobox domain
SMART	SM00389	6.0E-10	1	57	IPR001356	Homeobox domain
CDD	cd00086	1.38E-12	2	53	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-14	3	52	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-14	3	52	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-13	3	52	IPR009057	Homeodomain-like
PROSITE profile	PS50827	11.763	616	675	IPR018501	DDT domain
SMART	SM00571	8.9E-8	622	675	IPR018501	DDT domain
Pfam	PF02791	1.6E-12	624	672	IPR018501	DDT domain
Pfam	PF05066	1.5E-15	792	860	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.7E-10	1015	1057	IPR028942	WHIM1 domain
Pfam	PF15613	3.7E-12	1193	1265	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1838 aa Download sequence Send to blast
MKSPYQLEVL EKTYAVEQYP SETLRAELSA KIGLSDRQLQ MWFCHRRLKD RKPPTKRQRR 60 EEEAAAVPLM APPPVLPPPA LPLSSGELLI GASSPYDEPP LPPVHSRRGA GRSSAVPRLS 120 APDIGRRYYE PLPVMLPPPP VASMQLTPSE LRVIHSVESQ LGEPLRDDGP VLGIDFDPLP 180 PGSFGAPIVP EQQKQHVRSY DTKIYSRHDS KLLKASAFFP SVEHPFVPNS IAGKRKSMVG 240 NLPPVHPHAG SRAVHEYQFL PEQPSDRYEG ASRSHEGASR SHYYDTPVEA SNSRMSSHTP 300 GSHLLRGSDE AAPGYAFQGQ MSGSGHLPQS GRREVLLAVP TDYEMIQSNS DLNSVPVEGQ 360 YGISQVAGIE NSLLPSERRA YHDEDGSRVD RKRKHNEEAK IAKEVEAHER RIRKELEKQD 420 MMKRKREEQM RKEMERHDRE RRKEEERLLR ERQREQERFL REQRREHERM EKFMQKQSRR 480 AEKQRQKEEL RKEKEAARQK AANERATARR IAREYMELVE DERLELMELA AQSKGLPSML 540 SLDSDTLQQL DSFRGMLTPF PPEPVRLKEP FSIKPWTVSE DNVGNLLMMD KQIDLFDTLA 600 SLHQVYRRDL HDLLYLYLST SLQMVWKFSI TFADVLGLSS VTLDEFVQSL HDYDSRLLGE 660 LHIALLKSII KDIEDVSRTP SVALAVNPAG GHPQIVEGAY AWGFNIRSWQ RHLNVLTWPE 720 ILRQFALSAG FGPQLKKRNA EDVYYRDDNE GHDGQDVIST LRNGSAAVHA AALMKERGYT 780 HRRRSRHRLT PGTVKFAAFH VLSLEGSKGL TILEVAERIQ KSGLRDLTTS KTPEASIAAA 840 LSRDTKLFER TAPSTYCVKS PYRKDPADSE VVLSSAREKI RAFQNVISDS EAEKEADDAE 900 RDEDSECDDA DDDPDGDDVN IDVGDGKDPL IGVKEQDGVP ITTIVDNTKR EKEKVDALTQ 960 SSDLTTSGKE APKPSLGKPS SANTSSVSPV RASSEYHEVA PTDAEDKEID ESNQGESWVQ 1020 GLAEGDYCDL SVEERLNALV ALVGVANEGN FIRAVLEERL ESANALKKQM LAEAQLDKRR 1080 SKEEFAGRVQ YNSNMNLKAD VNQENATEST PTPFHNVDKH NDGNAGVVDN NNNEIIDHNS 1140 NAANASYERN GLGQDITATP DTLSVQQYAY ADKTRSQLRA YIGHRAEQLF VYRSLPLGQD 1200 RRRNRYWQFS TSASPNDPGS GRIFFECRDG YWRVLDTEEA FDSLVASLDT RGSREAQLHS 1260 MLQRIEPTFK EAIKRKKSAV VEQSAGRYLK NGATEMIRAS YRSDFGSPSS NLSGVTSDSA 1320 TAYSDSFKIE LGRNDVEKTA ISKRADVFIR WMWRGCNDCK LTCAMEYGKK RCSELMHSCN 1380 YCYQIYLAEE RHCSSCHKNF KSIHNFSDHA SQCEDKRRTD HNWKMQTADH SVPIGVRLLK 1440 LQLSTIEASI PPEAIQPFWT DGYRKSWGVK LHSTTSLEEI FQMLTLLEAA IKRDHLSSEF 1500 ETTSELLNLN TQDNPSQNHV GLSGSAAVLP WVPDTTAAIA LRMLDLDSAV SYMQNQKMER 1560 NGGDFMKPPS RFVAVKNAQE LDPLETTGLD LFDGRWATGS GRRGRGRGSR GGSRGGRGRS 1620 RGGRVPRGIN IASRIGFKDE NEASRKNTRR GRTRGRGRGR GRRTVRSRQP SEGKGRSIPK 1680 ENLLGSFSML SNAKAATVEE SPRSSGADEW GLENRRPYID GDENSSGSQL DQSEDNEENG 1740 QPMDEEYDEQ VPDYSRGYSG GSRPHGMIDD DTRTRGTGLL GIRLEKPTAT RIMRSHVMEE 1800 DFACKGSWSS VDRKINEEMC WEERQPVPCD VGYIDWSF

Sequence ? help Back to Top

Protein Sequence Length: 1838 aa Download sequence Send to blast

MKSPYQLEVL EKTYAVEQYP SETLRAELSA KIGLSDRQLQ MWFCHRRLKD RKPPTKRQRR  60
EEEAAAVPLM APPPVLPPPA LPLSSGELLI GASSPYDEPP LPPVHSRRGA GRSSAVPRLS  120
APDIGRRYYE PLPVMLPPPP VASMQLTPSE LRVIHSVESQ LGEPLRDDGP VLGIDFDPLP  180
PGSFGAPIVP EQQKQHVRSY DTKIYSRHDS KLLKASAFFP SVEHPFVPNS IAGKRKSMVG  240
NLPPVHPHAG SRAVHEYQFL PEQPSDRYEG ASRSHEGASR SHYYDTPVEA SNSRMSSHTP  300
GSHLLRGSDE AAPGYAFQGQ MSGSGHLPQS GRREVLLAVP TDYEMIQSNS DLNSVPVEGQ  360
YGISQVAGIE NSLLPSERRA YHDEDGSRVD RKRKHNEEAK IAKEVEAHER RIRKELEKQD  420
MMKRKREEQM RKEMERHDRE RRKEEERLLR ERQREQERFL REQRREHERM EKFMQKQSRR  480
AEKQRQKEEL RKEKEAARQK AANERATARR IAREYMELVE DERLELMELA AQSKGLPSML  540
SLDSDTLQQL DSFRGMLTPF PPEPVRLKEP FSIKPWTVSE DNVGNLLMMD KQIDLFDTLA  600
SLHQVYRRDL HDLLYLYLST SLQMVWKFSI TFADVLGLSS VTLDEFVQSL HDYDSRLLGE  660
LHIALLKSII KDIEDVSRTP SVALAVNPAG GHPQIVEGAY AWGFNIRSWQ RHLNVLTWPE  720
ILRQFALSAG FGPQLKKRNA EDVYYRDDNE GHDGQDVIST LRNGSAAVHA AALMKERGYT  780
HRRRSRHRLT PGTVKFAAFH VLSLEGSKGL TILEVAERIQ KSGLRDLTTS KTPEASIAAA  840
LSRDTKLFER TAPSTYCVKS PYRKDPADSE VVLSSAREKI RAFQNVISDS EAEKEADDAE  900
RDEDSECDDA DDDPDGDDVN IDVGDGKDPL IGVKEQDGVP ITTIVDNTKR EKEKVDALTQ  960
SSDLTTSGKE APKPSLGKPS SANTSSVSPV RASSEYHEVA PTDAEDKEID ESNQGESWVQ  1020
GLAEGDYCDL SVEERLNALV ALVGVANEGN FIRAVLEERL ESANALKKQM LAEAQLDKRR  1080
SKEEFAGRVQ YNSNMNLKAD VNQENATEST PTPFHNVDKH NDGNAGVVDN NNNEIIDHNS  1140
NAANASYERN GLGQDITATP DTLSVQQYAY ADKTRSQLRA YIGHRAEQLF VYRSLPLGQD  1200
RRRNRYWQFS TSASPNDPGS GRIFFECRDG YWRVLDTEEA FDSLVASLDT RGSREAQLHS  1260
MLQRIEPTFK EAIKRKKSAV VEQSAGRYLK NGATEMIRAS YRSDFGSPSS NLSGVTSDSA  1320
TAYSDSFKIE LGRNDVEKTA ISKRADVFIR WMWRGCNDCK LTCAMEYGKK RCSELMHSCN  1380
YCYQIYLAEE RHCSSCHKNF KSIHNFSDHA SQCEDKRRTD HNWKMQTADH SVPIGVRLLK  1440
LQLSTIEASI PPEAIQPFWT DGYRKSWGVK LHSTTSLEEI FQMLTLLEAA IKRDHLSSEF  1500
ETTSELLNLN TQDNPSQNHV GLSGSAAVLP WVPDTTAAIA LRMLDLDSAV SYMQNQKMER  1560
NGGDFMKPPS RFVAVKNAQE LDPLETTGLD LFDGRWATGS GRRGRGRGSR GGSRGGRGRS  1620
RGGRVPRGIN IASRIGFKDE NEASRKNTRR GRTRGRGRGR GRRTVRSRQP SEGKGRSIPK  1680
ENLLGSFSML SNAKAATVEE SPRSSGADEW GLENRRPYID GDENSSGSQL DQSEDNEENG  1740
QPMDEEYDEQ VPDYSRGYSG GSRPHGMIDD DTRTRGTGLL GIRLEKPTAT RIMRSHVMEE  1800
DFACKGSWSS VDRKINEEMC WEERQPVPCD VGYIDWSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1651	1661	RTRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540044.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0D9YCZ5	0.0	A0A0D9YCZ5_9ORYZ; Uncharacterized protein
STRING	OGLUM01G29920.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator