PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540032.1_FGP008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 191aa MW: 21588.5 Da PI: 8.6162 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 82 | 136 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k KN540032.1_FGP008 82 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 136 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.1 | 7.6e-41 | 82 | 168 | 1 | 87 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev L KN540032.1_FGP008 82 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVFVL 168 69********************************************************************************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-19 | 67 | 132 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-19 | 73 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-18 | 80 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-15 | 82 | 139 | No hit | No description |
Pfam | PF00046 | 5.5E-17 | 82 | 136 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.4E-6 | 109 | 118 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.4E-6 | 118 | 134 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-9 | 138 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.0E-15 | 138 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MMERAEDLRL SLSLSSPLIA PRTHHVAMLF HAPPEKRFLE MPLLPAAKRS EVVVAAEEER 60 AGLRGGGGSD EEDGGCGIDG SRKKLRLSKD QSAVLEDSFR EHPTLNPRQK ATLAQQLGLR 120 PRQVEVWFQN RRARTKLKQT EVDCEFLKRC CETLTEENRR LQKEVFVLSC SHDHDGTNSS 180 YARAYSCRKS A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 86 | SRKKLRL |
2 | 130 | 138 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540032.1_FGP008 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122006 | 0.0 | AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652606.1 | 1e-93 | PREDICTED: homeobox-leucine zipper protein HOX17 | ||||
Swissprot | Q01I23 | 2e-94 | HOX17_ORYSI; Homeobox-leucine zipper protein HOX17 | ||||
TrEMBL | A0A0E0KTJ1 | 3e-98 | A0A0E0KTJ1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G18440.1 | 5e-99 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 7e-48 | homeobox from Arabidopsis thaliana |