PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540032.1_FGP008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 191aa    MW: 21588.5 Da    PI: 8.6162
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540032.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1982136256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  KN540032.1_FGP008  82 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 136
                        788899***********************************************98 PP

2HD-ZIP_I/II127.17.6e-4182168187
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                        +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev  L
  KN540032.1_FGP008  82 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVFVL 168
                        69********************************************************************************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-1967132IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1973139IPR009057Homeodomain-like
PROSITE profilePS5007117.34678138IPR001356Homeobox domain
SMARTSM003898.3E-1880142IPR001356Homeobox domain
CDDcd000861.66E-1582139No hitNo description
PfamPF000465.5E-1782136IPR001356Homeobox domain
PRINTSPR000313.4E-6109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000313.4E-6118134IPR000047Helix-turn-helix motif
PfamPF021832.1E-9138168IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-15138181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MMERAEDLRL SLSLSSPLIA PRTHHVAMLF HAPPEKRFLE MPLLPAAKRS EVVVAAEEER  60
AGLRGGGGSD EEDGGCGIDG SRKKLRLSKD QSAVLEDSFR EHPTLNPRQK ATLAQQLGLR  120
PRQVEVWFQN RRARTKLKQT EVDCEFLKRC CETLTEENRR LQKEVFVLSC SHDHDGTNSS  180
YARAYSCRKS A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086SRKKLRL
2130138RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540032.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220060.0AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652606.11e-93PREDICTED: homeobox-leucine zipper protein HOX17
SwissprotQ01I232e-94HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLA0A0E0KTJ13e-98A0A0E0KTJ1_ORYPU; Uncharacterized protein
STRINGOPUNC04G18440.15e-99(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-48homeobox from Arabidopsis thaliana