PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540032.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 337aa    MW: 36600.3 Da    PI: 7.1666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540032.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.7e-112772146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       +g+W +eEde l++ v+ +G+ +W++I ++  + Rt+k+c++rw +
  KN540032.1_FGP006 27 KGPWMAEEDEVLLEHVRTHGPMDWSSIRSKGLLPRTGKSCRLRWVN 72
                       79******************99*****8876677**********87 PP
2Myb_DNA-binding43.38.5e-1483123345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++T+eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  KN540032.1_FGP006  83 KFTAEEERVVIELQAQFGNK-WARIATYLQ-GRTDNDVKNFWS 123
                        79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3572274IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-192475IPR009057Homeodomain-like
SuperFamilySSF466895.47E-2625122IPR009057Homeodomain-like
SMARTSM007176.6E-92676IPR001005SANT/Myb domain
CDDcd001673.79E-102974No hitNo description
PfamPF139211.7E-103079No hitNo description
PROSITE profilePS5129420.31975130IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-1876128IPR009057Homeodomain-like
SMARTSM007179.7E-1280128IPR001005SANT/Myb domain
PfamPF002495.2E-1283123IPR001005SANT/Myb domain
CDDcd001672.76E-1083122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MARAPGGVRR RSGRRGAGGG GGEALRKGPW MAEEDEVLLE HVRTHGPMDW SSIRSKGLLP  60
RTGKSCRLRW VNKLRPNLKS GCKFTAEEER VVIELQAQFG NKWARIATYL QGRTDNDVKN  120
FWSTRQKRLA RGGPLPAAAR PNKHNSGKGK APSSSSLDSQ TATFHQSSAS LDQASLEGNS  180
VGWQCREAAP FMGYDQACSG FFAFEGPLPL QLLPPADGEA SSSNAAQSAP PPLLFDQPPY  240
PLISFPGWPE RYVDVGHGFV DAGAMDGLAY QELLPMVQSV PMIMPFFGME CAHDAVKHEP  300
FDDLPPNMFD DAVDQPPPLP PPPPPPPSPS PSRDDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252512825126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540032.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8552180.0CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634881.20.0probable transcription factor MYB58
SwissprotQ0JB890.0MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A0E0DGS30.0A0A0E0DGS3_9ORYZ; Uncharacterized protein
STRINGOGLUM04G20730.10.0(Oryza glumipatula)
STRINGORUFI04G22380.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.13e-57MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]