PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540023.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 311aa    MW: 33704.9 Da    PI: 10.0147
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540023.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.71.9e-083392456
                       S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
           Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                       +p ++e++++  +l    ++ +++V++WFqNr+ + k
  KN540023.1_FGP003  3 NPPRDEIRRIRLQLqeygQVGDANVFYWFQNRKSRTK 39
                       79999******************************99 PP
2Wus_type_Homeobox65.51e-211412464
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++P+++ei+ri+ +L+eyG+++d+NVfyWFQNrk+R ++k
  KN540023.1_FGP003  1 MVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTKNK 41
                       78*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000465.5E-6339IPR001356Homeobox domain
SuperFamilySSF466891.97E-5342IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVNPPRDEIR RIRLQLQEYG QVGDANVFYW FQNRKSRTKN KLRSGGTGRA GLGLGGGGDD  60
GAPGGLAGKP VHAGDGARRR PRLVVPHANP GGDHHPPIDL TQRAPRPMQR GTRAASARDH  120
GRHDDHLLQR LQGVRPPFHG RHELHRRDAS TAAMILPFTT TAAATPSNVV ATSSALADQL  180
QGRLFRDWTC AWQPSSQKDA FNVASLSGLD FRMHRYASFL AVINSPEGGA APPPPSATVV  240
AVSRDDETMC TKTTSYSFPA TMHLNVRMFG EAAVLVRYSG EPVLVDDSGV TIEPLQQGAT  300
YYVLVTEEGV H
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540023.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241431e-121AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149611e-121AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881188.13e-63WUSCHEL-related homeobox 12
SwissprotA3B6V02e-64WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLA0A0E0A2U31e-62A0A0E0A2U3_9ORYZ; Uncharacterized protein
STRINGOGLUM05G27500.12e-63(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-21homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]