PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539975.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 205aa MW: 22685.2 Da PI: 10.159 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5e-27 | 17 | 66 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s KN539975.1_FGP002 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.235 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-35 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-28 | 10 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.76E-34 | 13 | 78 | No hit | No description |
Pfam | PF00319 | 3.7E-26 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR 60 LYEFASSASS IDTIFGRYWD LLDTTIDLNI EARDSRVDCN IQVWIRRQIV HGGLAPLLVG 120 DATPPFRGVG VAPRLALCID DDTPPRIKVA KAGGMEGGIM DVNDGLQEFG LHLMIALVWY 180 FMRQGSLGNK GSISGTTISD IKVSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-17 | 10 | 108 | 3 | 91 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | RRRKRGKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539975.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242980 | 1e-166 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649437.1 | 3e-57 | MADS-box transcription factor 51-like isoform X1 | ||||
TrEMBL | A2YXF6 | 1e-131 | A2YXF6_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6YZE5 | 1e-131 | Q6YZE5_ORYSJ; Transcription factor MADS37-like | ||||
STRING | ORGLA08G0229900.1 | 7e-58 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 2e-25 | MIKC_MADS family protein |