PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539957.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 398aa    MW: 43685.6 Da    PI: 9.6209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539957.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30272330259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  KN539957.1_FGP006 272 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 330
                        7***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-26269332IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-31269332IPR003657WRKY domain
SMARTSM007742.5E-36271331IPR003657WRKY domain
PROSITE profilePS5081128.461271332IPR003657WRKY domain
PfamPF031065.9E-27273330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTAKEAGDGY QERRVVVGEM DFFKTAEKRG ERKEPPPPLP MGLLVGRRRN SGSEESIVDD  60
GGVSSNDDEH REAKAALAVT KAEIGRLSDE NKRLKNMLSN VTTKYNSLQM QFVTLMQQRR  120
SVLATPIHQQ EAPHSIGGGG GGGDVCAPSS SNPDAAVPAM MPLPHFDHHH HPIHGGRERG  180
SSPAEADHHR HHQQEQPPPP QQQQQQLPPS WLPADKVPRF LPGKGPEPVP EAATMRKARV  240
SVRARSDAPM LVFFFFAWMF VLRCRHGDPQ ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA  300
AGCPVRKQVQ RCAEDRTVLI TTYEGNHNHP RPPAAMAMAS TTAAAASMLL SGSMPSADGS  360
LMAGARRGVN FVATLPHIEL SHALTFLWSS LNREKNNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-192713341476WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539957.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-166AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-166AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.10.0probable WRKY transcription factor 31
TrEMBLA0A0E0L5U90.0A0A0E0L5U9_ORYPU; Uncharacterized protein
STRINGOPUNC05G23690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-58WRKY family protein