PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539955.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 338aa    MW: 38114.9 Da    PI: 6.757
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539955.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.61.1e-17297334137
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+
  KN539955.1_FGP002 297 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQ 334
                        58***************************99******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-18282334IPR003657WRKY domain
SuperFamilySSF1182904.18E-16290334IPR003657WRKY domain
PROSITE profilePS5081119.497292338IPR003657WRKY domain
SMARTSM007744.1E-9297338IPR003657WRKY domain
PfamPF031063.2E-15298334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEQKEEEKEL KADKNLRRRG EEMIKGDSKQ LASMYMKEEM IKGERQLGTH EDRLKDEVIK  60
DGDKISDGNF FKSLQNISST KEEVCSPGPI ERSCMDSSLL NMKAQNKGQD DKLESTRAEM  120
GEVREENERL KTLLSRISHD YRSLQTHFYD VLQQGRAKKL PDSPATDIEE PEFVSLRLGT  180
STSKCKKEDK STTSSEVKGS TEDFLKIKGG LSLGLSDCRV DANNSEKVQP DVMTLSPEGS  240
FEDARDDTAE TTEQWPPSKM LKNLRSVGAE AEDDIAPQPQ VKKARVSVRA RCDAPTMNDG  300
CQWRKYGQKI AKGNPCPRAY YRCTVAAGCP VRKQKWTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218DKNLRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539955.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643468.10.0probable WRKY transcription factor 72 isoform X1
SwissprotA0A3Q7GFB58e-61WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A0E0A4Y10.0A0A0E0A4Y1_9ORYZ; Uncharacterized protein
STRINGOGLUM06G03030.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-49WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]