PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539911.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 235aa MW: 25550.8 Da PI: 4.6953 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.5 | 1e-11 | 73 | 125 | 4 | 56 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +k+ rr ++NR +A +sR+RKk++++ Le+k+k Leae ++L l+ e KN539911.1_FGP004 73 SKKKRRQMRNRDSAMKSRERKKMYVKDLETKSKYLEAECRRLSYALQCCAAEN 125 79*************************************99997777665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.0E-13 | 69 | 133 | No hit | No description |
SMART | SM00338 | 5.9E-6 | 69 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.737 | 72 | 114 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-10 | 73 | 130 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.19E-11 | 74 | 132 | No hit | No description |
CDD | cd14704 | 1.90E-13 | 75 | 126 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 77 | 92 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030968 | Biological Process | endoplasmic reticulum unfolded protein response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEEGPAAEEG VGAEDFFDAL LVDGGEEGEE EEEEGKGSEA GGSTDGDSGK ENEVATPDAE 60 KEDVEVDGDD PMSKKKRRQM RNRDSAMKSR ERKKMYVKDL ETKSKYLEAE CRRLSYALQC 120 CAAENMALRQ SLLKDRPVGA ATAMQESAVL TETLPLVSLL WLVSIVCLLL VPGLPNRNPV 180 ARSSAGRDLA TVTGKKTSSE QQLEETLLLH GRRCKGSRAR IKLDTGPFRL AAAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 77 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00019 | PBM | Transfer from AT1G42990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539911.1_FGP004 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107021 | 0.0 | AK107021.1 Oryza sativa Japonica Group cDNA clone:002-121-A01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641141.1 | 1e-147 | bZIP transcription factor 50 | ||||
Swissprot | Q69XV0 | 1e-148 | BZP50_ORYSJ; bZIP transcription factor 50 | ||||
TrEMBL | A0A0E0C927 | 1e-165 | A0A0E0C927_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G30760.1 | 1e-166 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6934 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G42990.1 | 5e-12 | basic region/leucine zipper motif 60 |
Publications ? help Back to Top | |||
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