PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539892.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 186aa MW: 20173.2 Da PI: 4.8642 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 62.7 | 6.6e-20 | 140 | 176 | 2 | 37 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 +Dg++WrKYGqK+ kg+++pr+YYrCt+a +Cpv+k+ KN539892.1_FGP004 140 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsQCPVRKQ 176 7***************************99******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.211 | 134 | 186 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-18 | 138 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-17 | 139 | 183 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-13 | 139 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-16 | 141 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEMMVQKQRR HEEELEEERA GGLCAREIKE LDFFSSAAAA GAGRDDDDDV LRADGISRSS 60 HAGFMVSTAL DLLTSVNDGD EEKKKGESNV HQSKAPIAGV QLLDALAAAS PASHRRRAAA 120 AVDGDRTADS DGGEGDENIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMASQ CPVRKQDTPF 180 AHDINE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539892.1_FGP004 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC093490 | 1e-65 | AC093490.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1127_B08, complete sequence. | |||
GenBank | AP014961 | 1e-65 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-65 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638125.1 | 4e-51 | probable WRKY transcription factor 47 isoform X2 | ||||
Swissprot | Q9C519 | 2e-21 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0D9ZTX5 | 1e-45 | A0A0D9ZTX5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G02570.1 | 2e-46 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-22 | WRKY family protein |