PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539864.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 53aa    MW: 5906.74 Da    PI: 11.1664
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539864.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.59.5e-123253122
                       ---SS-EEEEEEE--TT-SS-E CS
               WRKY  1 ldDgynWrKYGqKevkgsefpr 22
                       ldDgy+WrKYG+K+vk+s++pr
  KN539864.1_FGP001 32 LDDGYRWRKYGKKMVKNSPNPR 53
                       59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-131953IPR003657WRKY domain
SuperFamilySSF1182903.27E-102453IPR003657WRKY domain
PROSITE profilePS5081114.4122753IPR003657WRKY domain
PfamPF031062.7E-73353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
MDRGPAPASG GVPRSKNGSK IAFKTRSEVD VLDDGYRWRK YGKKMVKNSP NPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539864.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033419e-70AP003341.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06.
GenBankAP0034929e-70AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02.
GenBankAP0149579e-70AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126099e-70CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635031.12e-27WRKY transcription factor SUSIBA2
SwissprotQ8VWQ55e-15WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A0E0C3W45e-26A0A0E0C3W4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0MYJ81e-26A0A0E0MYJ8_ORYRU; Uncharacterized protein
STRINGOMERI01G18070.18e-27(Oryza meridionalis)
STRINGORUFI01G23500.12e-27(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-17WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]