PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539826.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 229aa    MW: 26278.2 Da    PI: 9.7077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539826.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00027292323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C +Cgk F  k + ++H +++
  KN539826.1_FGP004 72 CRKCGKAFAVKGDWRTHEKNC 92
                       *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-65290No hitNo description
Gene3DG3DSA:3.30.160.601.9E-55690IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.6217090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MQMHMWGHGS QYRKGPESLR GIQPTAMLRL PCYCCAAGCR NNIDHPRAKP LKDFRTLQTH  60
YKRKHGLKPF LCRKCGKAFA VKGDWRTHEK NCGKLWYCLC GSEFKHKRSL KDHARAFGHG  120
HSALDADDDD GAVSDADHHS SSSYAVSTTT VDVYEFAHRF RSLLVIVFFF FFVRRLILIL  180
DRFVSITSYS VFSLAFYVWT KATTKNVPSP GHAWKVALDN VLEMETNER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539826.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875660.0AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.
GenBankAP0038830.0AP003883.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1134_H03.
GenBankAP0041900.0AP004190.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1506_F01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572359.11e-88zinc finger protein WIP2
RefseqXP_025821697.15e-89zinc finger protein WIP2-like
SwissprotQ9SVY15e-84ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA3C0342e-90A3C034_ORYSJ; Uncharacterized protein
STRINGPavir.Fa00506.1.p2e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-80C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]