PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539802.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 272aa MW: 30448.2 Da PI: 5.4367

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539802.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.2	7.8e-50	43	168	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + KN539802.1_FGP002 43 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIR 133 79*************************.89***********7777899********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +glkktLvfy+g+apkg++++W+m+eyrl KN539802.1_FGP002 134 AENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 168 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-55	42	210	IPR003441	NAC domain
PROSITE profile	PS51005	53.625	42	211	IPR003441	NAC domain
Pfam	PF02365	6.4E-25	44	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSRDVVDDGS SVVTAAGAGS GEEAAEEEAA VAAGDSHEND LVMPGFRFHP TEEELIEFYL 60 RRKVEGRRFN VELITFLDLY RFDPWELPAM AVIGEKEWFF YVPRDRKYRN GDRPNRVTAS 120 GYWKATGADR MIRAENNRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP PAADADLFYK 180 AIVTTLQLSV TASFSFDLML SEISLCRVYK RSGIDDGHGH HQRPAGNLMP QLGTLPISPP 240 LTAVSDKLWD WSSVPDTSTA RDYDSSGFSD PK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-54	44	172	19	146	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-54	44	172	19	146	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-54	44	172	19	146	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-54	44	172	19	146	NO APICAL MERISTEM PROTEIN
4dul_A	4e-54	44	172	19	146	NAC domain-containing protein 19
4dul_B	4e-54	44	172	19	146	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539802.1_FGP002

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102902	0.0	AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655332.1	1e-128	PREDICTED: NAC domain-containing protein 72-like
Swissprot	Q9ZVP8	5e-92	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	J3M793	1e-127	J3M793_ORYBR; Uncharacterized protein
STRING	OB05G24670.1	1e-127	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	6e-93	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]