PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539801.1_FGP008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 117aa    MW: 12920.8 Da    PI: 10.5273
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539801.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.81.4e-2554101349
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEE CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvve 49 
                        D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++dp +++
  KN539801.1_FGP008  54 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAMLK 101
                        9************************9888***************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.1E-103150IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.1E-2640101IPR003657WRKY domain
PROSITE profilePS5081124.7347100IPR003657WRKY domain
SuperFamilySSF1182902.09E-2150101IPR003657WRKY domain
SMARTSM007744.1E-2552104IPR003657WRKY domain
PfamPF031067.1E-2154101IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MASTHTPPSS QPKPSAAHGP RSAPGSGGEL RKNRVKRTIR VPAISSKIAD IPPDEYSWRK  60
YGQKPIKGSP YPRGYYKCST VRGCPARKHV ERATDDPAML KCQPTTPAID YLAYRKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1740100261WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539801.1_FGP008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0612661e-113AK061266.1 Oryza sativa Japonica Group cDNA clone:006-212-C10, full insert sequence.
GenBankAK0729381e-113AK072938.1 Oryza sativa Japonica Group cDNA clone:J023149N23, full insert sequence.
GenBankCT8320681e-113CT832068.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633632.16e-44WRKY transcription factor WRKY51-like
RefseqXP_015691793.15e-44PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV153e-42WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A0D3FZV31e-42A0A0D3FZV3_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZQA11e-42A0A0D9ZQA1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H5M01e-42A0A0E0H5M0_ORYNI; HKT12 transporter
TrEMBLA0A0E0PDQ11e-42A0A0E0PDQ1_ORYRU; HKT12 transporter
TrEMBLA0A172ZNC11e-42A0A172ZNC1_ORYRU; HKT12 transporter
TrEMBLA0A172ZND31e-42A0A172ZND3_ORYNI; HKT12 transporter
TrEMBLA0A172ZNG51e-42A0A172ZNG5_ORYNI; HKT12 transporter
TrEMBLA0A172ZNG71e-42A0A172ZNG7_ORYNI; HKT12 transporter
TrEMBLA0A172ZNH31e-42A0A172ZNH3_ORYNI; HKT12 transporter
TrEMBLA0A172ZNH81e-42A0A172ZNH8_ORYNI; HKT12 transporter
TrEMBLA0A172ZNI61e-42A0A172ZNI6_ORYNI; HKT12 transporter
TrEMBLA0A172ZNJ01e-42A0A172ZNJ0_ORYNI; HKT12 transporter
TrEMBLA0A172ZNK81e-42A0A172ZNK8_ORYSI; HKT12 transporter
TrEMBLA0A172ZNL21e-42A0A172ZNL2_ORYNI; HKT12 transporter
TrEMBLA0A172ZNM01e-42A0A172ZNM0_ORYNI; HKT12 transporter
TrEMBLA0A172ZP191e-42A0A172ZP19_ORYNI; HKT12 transporter
TrEMBLA0A172ZPJ71e-42A0A172ZPJ7_ORYNI; HKT12 transporter
TrEMBLB3GAW32e-43B3GAW3_WHEAT; WRKY20 transcription factor (Fragment)
TrEMBLQ6IEL31e-42Q6IEL3_ORYSI; HKT12 transporter
TrEMBLQ7XNY31e-42Q7XNY3_ORYSJ; OSJNBb0015N08.8 protein
STRINGOMERI10G14590.11e-43(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-44WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  3. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  6. Jiang CH, et al.
    Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.
    J. Exp. Bot., 2016. 67(1): p. 157-74
    [PMID:26433201]
  7. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]