PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539801.1_FGP008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 117aa MW: 12920.8 Da PI: 10.5273 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.8 | 1.4e-25 | 54 | 101 | 3 | 49 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEE CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvve 49 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp +++ KN539801.1_FGP008 54 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAMLK 101 9************************9888***************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 6.1E-10 | 31 | 50 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-26 | 40 | 101 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.73 | 47 | 100 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-21 | 50 | 101 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-25 | 52 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-21 | 54 | 101 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MASTHTPPSS QPKPSAAHGP RSAPGSGGEL RKNRVKRTIR VPAISSKIAD IPPDEYSWRK 60 YGQKPIKGSP YPRGYYKCST VRGCPARKHV ERATDDPAML KCQPTTPAID YLAYRKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-17 | 40 | 100 | 2 | 61 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539801.1_FGP008 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061266 | 1e-113 | AK061266.1 Oryza sativa Japonica Group cDNA clone:006-212-C10, full insert sequence. | |||
GenBank | AK072938 | 1e-113 | AK072938.1 Oryza sativa Japonica Group cDNA clone:J023149N23, full insert sequence. | |||
GenBank | CT832068 | 1e-113 | CT832068.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103N04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633632.1 | 6e-44 | WRKY transcription factor WRKY51-like | ||||
Refseq | XP_015691793.1 | 5e-44 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 3e-42 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0D3FZV3 | 1e-42 | A0A0D3FZV3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZQA1 | 1e-42 | A0A0D9ZQA1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H5M0 | 1e-42 | A0A0E0H5M0_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A0E0PDQ1 | 1e-42 | A0A0E0PDQ1_ORYRU; HKT12 transporter | ||||
TrEMBL | A0A172ZNC1 | 1e-42 | A0A172ZNC1_ORYRU; HKT12 transporter | ||||
TrEMBL | A0A172ZND3 | 1e-42 | A0A172ZND3_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZNG5 | 1e-42 | A0A172ZNG5_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZNG7 | 1e-42 | A0A172ZNG7_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZNH3 | 1e-42 | A0A172ZNH3_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZNH8 | 1e-42 | A0A172ZNH8_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZNI6 | 1e-42 | A0A172ZNI6_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZNJ0 | 1e-42 | A0A172ZNJ0_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZNK8 | 1e-42 | A0A172ZNK8_ORYSI; HKT12 transporter | ||||
TrEMBL | A0A172ZNL2 | 1e-42 | A0A172ZNL2_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZNM0 | 1e-42 | A0A172ZNM0_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZP19 | 1e-42 | A0A172ZP19_ORYNI; HKT12 transporter | ||||
TrEMBL | A0A172ZPJ7 | 1e-42 | A0A172ZPJ7_ORYNI; HKT12 transporter | ||||
TrEMBL | B3GAW3 | 2e-43 | B3GAW3_WHEAT; WRKY20 transcription factor (Fragment) | ||||
TrEMBL | Q6IEL3 | 1e-42 | Q6IEL3_ORYSI; HKT12 transporter | ||||
TrEMBL | Q7XNY3 | 1e-42 | Q7XNY3_ORYSJ; OSJNBb0015N08.8 protein | ||||
STRING | OMERI10G14590.1 | 1e-43 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-44 | WRKY DNA-binding protein 11 |