PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539767.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 152aa MW: 16262.7 Da PI: 10.4097 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.8 | 6.9e-16 | 110 | 146 | 2 | 36 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkk 36 Dg+ WrKYGqKe++g ++pr YYrC+++ gC +++ KN539767.1_FGP004 110 ADGFIWRKYGQKEINGCKHPRLYYRCAFRgqGCLATR 146 6***************************9989*9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-15 | 102 | 147 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.296 | 104 | 152 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-14 | 105 | 147 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-8 | 109 | 151 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-13 | 111 | 147 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MAMLGSSSAV VLELMTMGYQ SAAYLGELLR AASPAQAGDE QQELAAEILR CCDRVIAKLS 60 RGGATGATTG KKRKAAESAA VTSSSLPVTP TKRRARGAEA VREVRSGTTA DGFIWRKYGQ 120 KEINGCKHPR LYYRCAFRGQ GCLATRRGKN TC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539767.1_FGP004 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108657 | 0.0 | AK108657.1 Oryza sativa Japonica Group cDNA clone:002-148-E07, full insert sequence. | |||
GenBank | AY870606 | 0.0 | AY870606.1 Oryza sativa (japonica cultivar-group) WRKY21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621234.1 | 2e-93 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0E0FV26 | 3e-92 | A0A0E0FV26_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N484 | 4e-92 | A0A0E0N484_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WWF8 | 3e-92 | A2WWF8_ORYSI; Uncharacterized protein | ||||
TrEMBL | A2ZZ24 | 7e-93 | A2ZZ24_ORYSJ; Uncharacterized protein | ||||
TrEMBL | I1NST2 | 4e-92 | I1NST2_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q8RV01 | 4e-92 | Q8RV01_ORYSJ; Os01g0821600 protein | ||||
STRING | ORUFI01G38690.1 | 7e-93 | (Oryza rufipogon) | ||||
STRING | OS01T0821600-01 | 7e-93 | (Oryza sativa) | ||||
STRING | ONIVA01G40390.1 | 5e-93 | (Oryza nivara) | ||||
STRING | ORGLA01G0292200.1 | 6e-93 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8322 | 31 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-13 | WRKY DNA-binding protein 46 |