PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539767.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 230aa MW: 26226.7 Da PI: 9.7947 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.9 | 8.8e-23 | 123 | 184 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++++s++ r Y++Ct++ +C +kk+v+ r+a +p ++++tY +eH+++ KN539767.1_FGP001 123 KDGYQWRKYGQKNIQDSNYLRLYFKCTFSherRCAAKKQVQqRDAGEPPMFVVTYLNEHTCQ 184 7**************************988899*******7356789*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.1E-25 | 111 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-22 | 117 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-34 | 122 | 185 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-23 | 123 | 184 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.88 | 124 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAFGQDTIEQ LYRELAGGRR LSAKLQALLE GPLDRRGQKE AVDVSRELGR VFMVSLYMLK 60 PCSNSSRRPE GVTRTAPETR TDDSICLHTP ARVKRVRSEE VLVKNGREEV VTRTEIITPS 120 PYKDGYQWRK YGQKNIQDSN YLRLYFKCTF SHERRCAAKK QVQQRDAGEP PMFVVTYLNE 180 HTCQQPQAVP GTPNTAGRHL YWTVTSGRPV GRERTYQDEQ AAGRNSSCLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 9e-14 | 124 | 183 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539767.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003302 | 1e-157 | AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11. | |||
GenBank | AP003348 | 1e-157 | AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12. | |||
GenBank | AP014957 | 1e-157 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-157 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646438.1 | 1e-104 | PREDICTED: probable WRKY transcription factor 62 | ||||
TrEMBL | A0A0D3EVL3 | 1e-139 | A0A0D3EVL3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FV24 | 1e-139 | A0A0E0FV24_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N482 | 1e-139 | A0A0E0N482_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WWF5 | 1e-139 | A2WWF5_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NSS9 | 1e-139 | I1NSS9_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q8RUA9 | 1e-139 | Q8RUA9_ORYSJ; WRKY transcription factor 20 | ||||
STRING | ORUFI01G38670.1 | 1e-140 | (Oryza rufipogon) | ||||
STRING | ONIVA01G40370.1 | 1e-140 | (Oryza nivara) | ||||
STRING | ORGLA01G0291900.1 | 1e-140 | (Oryza glaberrima) | ||||
STRING | OBART01G35350.1 | 1e-140 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13243 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01900.1 | 1e-18 | WRKY DNA-binding protein 62 |