PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539764.1_FGP005

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 775aa MW: 86425.4 Da PI: 5.0414

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539764.1_FGP005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	39.3	1.4e-12	597	621	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kpr+rWtpeLHerFv+av++LGGse KN539764.1_FGP005 597 KPRMRWTPELHERFVDAVNKLGGSE 621 79*********************97 PP
2	G2-like	51.7	1.9e-16	649	679	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kAtPk++ ++mkv+gLt++hvkSHLQkYR+ KN539764.1_FGP005 649 TKATPKAVQKVMKVDGLTIYHVKSHLQKYRT 679 69****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11107	7.7E-47	1	211	No hit	No description
Pfam	PF11107	3.0E-18	218	347	No hit	No description
SuperFamily	SSF46689	2.01E-14	594	623	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-28	596	680	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-6	599	626	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.5E-11	647	679	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.01E-14	652	680	IPR009057	Homeodomain-like
Pfam	PF14379	3.9E-18	697	739	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence Send to blast
MEELLGLVRG FVDVLVLAGG HTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE 60 SARELDAALV QLTSNPNFPK GIEDIRSKTL ATARELVVKH FLKTTNAENL GAVLQAVVEM 120 DMDGISASDE HNVCQEYVQS ILDMNLPSLM RTKNACDVGH STSSDEFCEE SLFTGNSQIL 180 LKELQKKLDS GSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IVDKFILWKQ 240 WKAKCLSYLL DERTIRIMSG TNLIFNAPKE QWMGLFEPLK VSADSSQSGI IEVMELCLLG 300 LVARQWNSLI ESFMSHTFSS YPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ 360 SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAGSEDRKCN CGGDGIDQHQ 420 NSSNFTSDLY INNSESPNGK LSSESYAIDT SGCDSSLPQT QSLYKGNPNS LRMVYPKVSE 480 QNSWSQEPLP GPFVCPTSVD FFDQQDMAIF DQQIQDNIAA SPRTNLAKQN EWFSSGTSLQ 540 YLESSVSAGS VLKAADATST TPSNYSHFHA QRNTSNPPNF NELCSGNIAS SNIAPTKPRM 600 RWTPELHERF VDAVNKLGGS ESWSLILCSS YHIFILNFYR TVLFSQEETK ATPKAVQKVM 660 KVDGLTIYHV KSHLQKYRTV HHRPQLSDGR GMETTCEGLR VQIGLQKQLH EQLEIQRKLQ 720 LQVEEHSKYL AMIIEKQSES LRQLGALPRS LDAPTQVLDN RETCEGQTGD ADSAE

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence Send to blast

MEELLGLVRG FVDVLVLAGG HTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE  60
SARELDAALV QLTSNPNFPK GIEDIRSKTL ATARELVVKH FLKTTNAENL GAVLQAVVEM  120
DMDGISASDE HNVCQEYVQS ILDMNLPSLM RTKNACDVGH STSSDEFCEE SLFTGNSQIL  180
LKELQKKLDS GSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IVDKFILWKQ  240
WKAKCLSYLL DERTIRIMSG TNLIFNAPKE QWMGLFEPLK VSADSSQSGI IEVMELCLLG  300
LVARQWNSLI ESFMSHTFSS YPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ  360
SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAGSEDRKCN CGGDGIDQHQ  420
NSSNFTSDLY INNSESPNGK LSSESYAIDT SGCDSSLPQT QSLYKGNPNS LRMVYPKVSE  480
QNSWSQEPLP GPFVCPTSVD FFDQQDMAIF DQQIQDNIAA SPRTNLAKQN EWFSSGTSLQ  540
YLESSVSAGS VLKAADATST TPSNYSHFHA QRNTSNPPNF NELCSGNIAS SNIAPTKPRM  600
RWTPELHERF VDAVNKLGGS ESWSLILCSS YHIFILNFYR TVLFSQEETK ATPKAVQKVM  660
KVDGLTIYHV KSHLQKYRTV HHRPQLSDGR GMETTCEGLR VQIGLQKQLH EQLEIQRKLQ  720
LQVEEHSKYL AMIIEKQSES LRQLGALPRS LDAPTQVLDN RETCEGQTGD ADSAE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539764.1_FGP005

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066382	0.0	AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627299.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627301.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627302.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878774.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878775.1	0.0	uncharacterized protein LOC4331121
TrEMBL	A0A0E0NMQ9	0.0	A0A0E0NMQ9_ORYRU; Uncharacterized protein
STRING	OMERI02G34190.3	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5494	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	5e-39	phosphate starvation response 1