PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539757.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1063aa    MW: 120270 Da    PI: 6.5255
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539757.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-2471157185
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+kv tpsdv+++grlv+p+++ae++    + ++s+ l +ed  g+ W++ ++y+++s++yv+t GW++F ++n+L++gD+v F++ 
  KN539757.1_FGP003  71 FDKVVTPSDVGNLGRLVIPRQHAERYfpRDVDKRSVVLLFEDGAGKPWRFLYSYCGSSQSYVFTLGWSHFFRENRLNAGDTVSFYRG 157
                        89**************************6666799*************************************************954 PP
2WRKY231.6e-0710431063222
                         --SS-EEEEEEE--TT-SS-E CS
               WRKY    2 dDgynWrKYGqKevkgsefpr 22  
                         dDg+nWrKYGqK++ gs++ r
  KN539757.1_FGP003 1043 DDGWNWRKYGQKDILGSKYQR 1063
                         8*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-3262168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2568159IPR015300DNA-binding pseudobarrel domain
CDDcd100179.81E-2369156No hitNo description
PfamPF023625.6E-2271158IPR003340B3 DNA binding domain
PROSITE profilePS5086313.6971172IPR003340B3 DNA binding domain
SMARTSM010193.8E-1771171IPR003340B3 DNA binding domain
Gene3DG3DSA:3.80.10.101.3E-16353369IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525401.08E-38389659IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3009.4E-4434480IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.4E-34435687IPR002182NB-ARC
PRINTSPR003648.8E-11439454No hitNo description
PRINTSPR003648.8E-11509523No hitNo description
PRINTSPR003648.8E-11606620No hitNo description
SuperFamilySSF520585.44E-297221008IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.3E-16801904IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.3E-69051005IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003648.8E-11973989No hitNo description
Gene3DG3DSA:2.20.25.801.2E-610321063IPR003657WRKY domain
PROSITE profilePS508119.8910371063IPR003657WRKY domain
SuperFamilySSF1182903.66E-610391063IPR003657WRKY domain
PfamPF031061.3E-410431063IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1063 aa     Download sequence    Send to blast
MEPGSSSREG EQQEPANERL TATGGGGGGS PVSDQELSDG EEVSDGEYQA GDDCSGYAVR  60
GRGFVEKEHM FDKVVTPSDV GNLGRLVIPR QHAERYFPRD VDKRSVVLLF EDGAGKPWRF  120
LYSYCGSSQS YVFTLGWSHF FRENRLNAGD TVSFYRGATE ATRDRLFIDS KRQMHHINRL  180
FQLLVRVRTM VSSFGEAGSP PPPNSPLPTA QNFTYKALKD CLQDLLYYNL LSLMGRNHTS  240
QSTPLRFACG VNAKIRDAIP KLIALIQFQS LSLPDPVLDT PAGAMVLSNC ISLCRGVWGI  300
MGFLCSENMK EKDEHRMLQV HAFDDLNYSA QDRITRMKEQ TMPSSLSDPI YLLPTAIRNL  360
LYLDLSNCSD IHNTDIKYFP YSFTDLRRHP YQSIWWKNNR VHTQCNLKSY RCLQQIIINR  420
LLSDGFDEGD ITSEQSLTSI CIFGESGTGK TELLHEIYND QMIIEGFHLR IWINMCDEKR  480
LLEKIIEFTT CAYCYDAPSS ILEETVREEL NGKRFLLVLN DADIEKQCFW TDVWKLANVG  540
AAGSALIVTT RSEEVASLFG AMRTYDMNSL SKEECFMVFQ EHAGCGLDIN NYHELTKVGW  600
KIVEKCGSNP LCIKALSGLL CHSETALSEI DSLAGGIVPA LRLCYDLLPS HLKQCFKFCS  660
LFPKDYVFVR HHIIQLWISQ GFVYPEEGSQ PEDTGLQYFN ELFCRSFFQH CPFSNDHGDK  720
FVMHELFHDL ARSVSKDESL SSEDPFFSLP ENICHLSLVI SDSNTVVLTK EHRHLQSLMV  780
VRRSASEYSS SFVPLLKILG LNDLLMKCGF LRALNLSCTT ILDLPGSIGW MKHLRFLAMN  840
NTKIKSLPTE IGQLNALQTL ELKDCCCLIE LPESTKNLTK LRHLDVQKEP GNIHVSMPSG  900
LGQLTDLQTL TVFNIGDDLS HCSIRDLKNL SGLRGHVHIT GLQNITAALS EFPSLKSLKI  960
EGFQKLKSVS FCPEMPMLQK LEISDCKELV SIDAPLLSVS NLKVVRCPKL HFGGSWLEGC  1020
LMWEEFKRDK CTIKYLLVKT MKDDGWNWRK YGQKDILGSK YQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C4e-39432934177687Disease resistance RPP13-like protein 4
6j5t_F4e-39432934177687Disease resistance RPP13-like protein 4
6j5t_G4e-39432934177687Disease resistance RPP13-like protein 4
6j5t_L4e-39432934177687Disease resistance RPP13-like protein 4
6j5t_O4e-39432934177687Disease resistance RPP13-like protein 4
6j5u_A4e-39432934177687Disease resistance RPP13-like protein 4
6j5v_A4e-39432934177687Disease resistance RPP13-like protein 4
6j5w_A4e-39432934177687Disease resistance RPP13-like protein 4
6j6i_C4e-39432934177687Disease resistance RPP13-like protein 4
6j6i_F4e-39432934177687Disease resistance RPP13-like protein 4
6j6i_G4e-39432934177687Disease resistance RPP13-like protein 4
6j6i_L4e-39432934177687Disease resistance RPP13-like protein 4
6j6i_O4e-39432934177687Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539757.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890240.0AK289024.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
GenBankAK3185810.0AK318581.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644837.10.0uncharacterized protein LOC4342906 isoform X1
TrEMBLA0A0E0AI150.0A0A0E0AI15_9ORYZ; Uncharacterized protein
STRINGOGLUM07G08970.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.13e-36B3 family protein