PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539732.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 881aa    MW: 96632 Da    PI: 8.9048
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539732.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP37.44.3e-12481527657
            E2F_TDP   6 LrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealn 57 
                        L+l  ++f++l+++ + + + l+++a++L    v  +rRRiYDi+NVLe+++
  KN539732.1_FGP002 481 LTLPKSSFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVG 527
                        6666789******9999************...**..*************985 PP
2E2F_TDP71.87.4e-23642719171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse..dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                        rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e   + +k+RR+YDi+NVL++ln i+k     ++k+++rw g
  KN539732.1_FGP002 642 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghAENTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 719
                        79***********************************9955679***********************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF483711.73E-919156IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.104.4E-1423164IPR011989Armadillo-like helical
SMARTSM013728.9E-15420562IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-12475527IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-8477527IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.3E-9485527IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-21639720IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-29642719IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-18643719IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.53E-11644719IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MAEMSLDCFC CDVKISHQSD QFAQTAAALA TAAAVEASAP TADLASYIHK LQPRLLKLLR  60
SNAFKAKPAL ISLIGVSASA AGAAEVTASV PCLRDTIASD DWAARKAAAE ALAALALEHK  120
DLLVSYKSSC ITMFEARRFD KVKIVRDSMN RMIEAWKEIP DAEEDECSSG APPASHSQRR  180
SSLAGSASDG RYPVATSTRR NSLPASRSPP PDASPSVNKR HSSSSARNKK QSPPSYRKAG  240
QAKNRDYKVD IAVTPDATPI KVVTEEKLLK GGNVRSRLEA RRMLFQDGDD RATKVAGLKA  300
GSRVVPYEEG GNMEEISEIG GGSERFQTGY KDEGLSEIRS QLLQIENQQS SLLDLIQKFM  360
GKSENGMNSL ETRVHGLEMA LDEISRDLAA SSGRTSNSEA HVNSCCILNP KFWRRHDASR  420
YSSSFSVSDG RNSSEGSRTS YKWGRQKFGV QGGFVTNPLA EPNISSAART ATAQEGRRKD  480
LTLPKSSFVA LYNRDDVESI GLDDAARRLG VERRRIYDIV NVLESVGGFL FFLARFDSEI  540
CFRLVCEKIL VRKAKNRYSW IGFGGVPMAL RELKERALRE KSGLAPLPVE EPSAAIMSDD  600
EDEDKMGDAD GDTESEKLSQ PVDNPSDNKP SAPRCRLRSD HRKEKSLGLL TQNFVKLFLT  660
MEVDTISLDE AAKLLLGEGH AENTKVRRLY DIANVLSSLN FIDKIQQADS RKPAFRWLGS  720
AGKPKAENGV TIAVPPPGKT ISNKRAFGTE LTNIDINISR LDSTIPKKAK LTQSGGEILK  780
NCKLSVQKQL GQGSKGGFVY GPFHPAGARK QELDNDNKGH TDNVQNWESL AASFRPQYQN  840
QALGDLFAHY VEAWKSWYSE FAQGSSMMQQ HFGMPVINQF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-2450071132228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539732.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2883420.0AK288342.1 Oryza sativa Japonica Group cDNA, clone: J090023K02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623384.10.0TORTIFOLIA1-like protein 3
TrEMBLA0A3L6EM110.0A0A3L6EM11_MAIZE; E2F transcription factor-like E2FE
STRINGOS02T0739900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.26e-81DP-E2F-like 1