PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539730.1_FGP007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 308aa    MW: 34519.6 Da    PI: 6.9956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539730.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.14.9e-20147208359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 
                        Dg++WrKYGqK++++s++ rsYYrCt++   +C+++k v++ ++  ++ + +++Y g+H+++
  KN539730.1_FGP007 147 DGHQWRKYGQKNINNSNHQRSYYRCTYKheqNCKATKTVQQLDSagETIMYTVVYYGQHTCK 208
                        9**************************9999*********9766115567899*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-22136208IPR003657WRKY domain
SuperFamilySSF1182902.22E-21140209IPR003657WRKY domain
SMARTSM007741.2E-32145209IPR003657WRKY domain
PROSITE profilePS5081114.458147208IPR003657WRKY domain
PfamPF031061.7E-23147208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKNKGSSCRY LPHSSAPCAT DGARCFRCDH RPAIDEIVRE QSLVTQLRAV VLPALETKAD  60
DGRAEIVAQL FGSILDCSRK VISALNSRYV EESPPDDDGI VDKRRAKRKN SEGKKGDDQV  120
KVKPHEHKRS RRYTNSTSQI TAVPHYDGHQ WRKYGQKNIN NSNHQRSYYR CTYKHEQNCK  180
ATKTVQQLDS AGETIMYTVV YYGQHTCKTN MSNAPLPVVE TSTPQSISTT CCSDDLGDYS  240
QKMENMHTPE LAEVCSDELG SYHAIIGAEH SALGLEDEHM HKLLDTFACG ALDLDSWEID  300
AIVRSGFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-131472081069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539730.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354200.0AC135420.4 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638919.10.0probable WRKY transcription factor 70 isoform X1
TrEMBLA0A0D3G4T70.0A0A0D3G4T7_9ORYZ; Uncharacterized protein
TrEMBLI1PTK20.0I1PTK2_ORYGL; Uncharacterized protein
STRINGORGLA05G0070000.10.0(Oryza glaberrima)
STRINGOBART05G08130.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-22WRKY DNA-binding protein 70